Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

9597327 .. 9601606

Gene Structure 4280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1117900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGGAATTGCTGGACATCTCATGATCCTCGTCCGAACAAATACATACCTTCAACTCCAGGGACATCGGGAACTCACAGCAAGAACATATTATCAAACACAAGCAGCAGTGTAGGAAGAAGTCATTTTTCAGAAGCATCATCAAGCTCAAAAATTGAAGAATTACAATCACAACAACCCAACGGACGGATTTTGGAGTTCCCAAACTTGAGAGTCTTCACTTTTGCAGAGATGAAGGCTGCCACCAGAAATTTCAAGTCAGATGCAGTTCTTGGTGAGGGAGGATTTGGGATAGTTTTCAAAGGTTGGGTGGATGAGAAAACACTTCAGCCTTCAAAAGCTGGCACTGGAATGATGGTCGCAATCAAGAAATTGAACCCAGAAAATGGGCAAGGATTTCAAGAGTGGCAGTCGGAAGTGAATTTTCTAGGACGACTTTCGCATCCGAACCTGGTGAAGCTATTAGGTTACTGTTGGGAAGACAAAGAACTACTCCTTGTTTATGAGTTCATGCAGAAAGGAAGTTTGGAGAATCATCTTTTCAGAAGGAGTGCGGGCATTGAACCGCTTTCTTGGGACAGAAGACTAAAAATAGCTATCGGAGCAGCTCGAGGCCTGGCCTTCTTACACAGTTCAGAAAAGAAAATCATCTACAGAGATTTTAAGGCCTCAAATATATTGCTTGATGGGAGTTTCAATGCAAAAATCTCAGATTTTGGCTTGGCGAAATTGGGGCCAGTTGGTGGAGAATCACATGTTTCAACTAGAATCATGGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGCAACAGGCCATTTGTACGTGAATAGCGATGTGTATGGATTCGGCGTTGTCTTGCTTGAAATTCTGACAGGGCTACGAGCACTTGATCTGAAACGTCCCAAGGAACAACAACAACTTGTAGAATGGGCTAAACCACTTCTACTGAACAAAAGAAAGCTGAAAACTATTTTGGATGTGCGGATGGAAAGCCAATATGCCTTCAAGGCAGCAATGCAGACAGCACAGATTACTGAAAAATGCTTAGCGCCGGACCCTAAAAGCAGGCCTTCCATGATAGAAGTCGTGGAGCAATTGGAACAAATTCAAGCAATCAAGGAACAACCAAAACAATCCAAACTTACATCTGTGCAAGCCACTTTTACTTTTGGAGCCAGTAAACAGTCGATTCGCCGTTCATCGTATCACTCTAGGTTTCATAGCTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

414

Amino Acids

46.06

Weight (kDa)

9.52

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	86 - 367	8.8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	88 - 369	6.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	386, 743
AciI	CCGC	3 cut(s)	554, 566, 991
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	4 cut(s)	250, 421, 873, 1113
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	186, 386, 743
AflIII	ACRYGT	1 cut(s)	754
AjnI	CCWGG	3 cut(s)	58, 450, 615
AjuI	GAANNNNNNNTTGG	4 cut(s)	509, 541, 965, 997
AluBI	AGCT	7 cut(s)	147, 341, 460, 596, 608, 970, 1233
AluI	AGCT	7 cut(s)	147, 341, 460, 596, 608, 970, 1233
Alw21I	GWGCWC	1 cut(s)	895
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	6 cut(s)	613, 618, 666, 734, 820, 1076
ApeKI	GCWGC	5 cut(s)	105, 239, 605, 791, 1019
ApoI	RAATTY	4 cut(s)	250, 421, 873, 1113
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	1060
AspS9I	GGNCC	2 cut(s)	734, 1063
AsuHPI	GGTGA	2 cut(s)	287, 466
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	1063
BbsI	GAAGAC	3 cut(s)	208, 486, 589
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	5 cut(s)	117, 226, 617, 778, 1031
BccI	CCATC	3 cut(s)	349, 680, 988
BceAI	ACGGC	1 cut(s)	1188
BciT130I	CCWGG	3 cut(s)	60, 452, 617
BfaI	CTAG	3 cut(s)	428, 765, 1221
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	1061
BglI	GCCNNNNNGGC	1 cut(s)	1016
BisI	GCNGC	5 cut(s)	106, 240, 606, 792, 1020
BlpI	GCTNAGC	1 cut(s)	1054
BlsI	GCNGC	5 cut(s)	107, 241, 607, 793, 1021
Bme1390I	CCNGG	3 cut(s)	60, 452, 617
Bme18I	GGWCC	1 cut(s)	1063
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	734, 1063
BmiI	GGNNCC	3 cut(s)	735, 1065, 1183
BmrFI	CCNGG	3 cut(s)	60, 452, 617
BmsI	GCATC	3 cut(s)	146, 253, 451
BpiI	GAAGAC	3 cut(s)	208, 486, 589
BpmI	CTGGAG	2 cut(s)	42, 780
Bpu1102I	GCTNAGC	1 cut(s)	1054
BpuEI	CTTGAG	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	832
BsaJI	CCNNGG	2 cut(s)	59, 912
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 386, 743
Bse1I	ACTGG	3 cut(s)	352, 737, 1185
Bse3DI	GCAATG	2 cut(s)	804, 1029
BseBI	CCWGG	3 cut(s)	60, 452, 617
BseDI	CCNNGG	2 cut(s)	59, 912
BseGI	GGATG	4 cut(s)	319, 442, 991, 999
BseLI	CCNNNNNNNGG	3 cut(s)	186, 386, 743
BseMI	GCAATG	2 cut(s)	804, 1029
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	3 cut(s)	352, 737, 1185
BseXI	GCAGC	5 cut(s)	117, 226, 617, 778, 1031
BshFI	GGCC	6 cut(s)	615, 620, 668, 736, 822, 1078
BsiHKAI	GWGCWC	1 cut(s)	895
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	1061
BslFI	GGGAC	3 cut(s)	76, 590, 894
BslI	CCNNNNNNNGG	3 cut(s)	186, 386, 743
BsmFI	GGGAC	3 cut(s)	76, 590, 894
BsnI	GGCC	6 cut(s)	615, 620, 668, 736, 822, 1078
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	2 cut(s)	25, 898
Bsp1720I	GCTNAGC	1 cut(s)	1054
BspACI	CCGC	3 cut(s)	554, 566, 991
BspANI	GGCC	6 cut(s)	615, 620, 668, 736, 822, 1078
BspCNI	CTCAG	1 cut(s)	722
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	735, 1065, 1183
BspPI	GGATC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	804, 1029
BsrI	ACTGG	3 cut(s)	352, 737, 1185
BssECI	CCNNGG	2 cut(s)	59, 912
BssMI	GATC	2 cut(s)	25, 898
BssT1I	CCWWGG	1 cut(s)	912
Bst2UI	CCWGG	3 cut(s)	60, 452, 617
Bst4CI	ACNGT	3 cut(s)	473, 632, 1194
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	4 cut(s)	343, 556, 1076, 1164
BstDEI	CTNAG	2 cut(s)	709, 1054
BstF5I	GGATG	4 cut(s)	319, 442, 991, 999
BstH2I	RGCGCY	1 cut(s)	1061
BstHHI	GCGC	1 cut(s)	1060
BstKTI	GATC	2 cut(s)	28, 901
BstMBI	GATC	2 cut(s)	25, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 1016
BstNI	CCWGG	3 cut(s)	60, 452, 617
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	58, 450, 615
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	5 cut(s)	117, 226, 617, 778, 1031
BstV2I	GAAGAC	3 cut(s)	208, 486, 589
BsuRI	GGCC	6 cut(s)	615, 620, 668, 736, 822, 1078
BtgZI	GCGATG	1 cut(s)	855
BtsCI	GGATG	4 cut(s)	319, 442, 991, 999
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 345
Cac8I	GCNNGC	4 cut(s)	343, 556, 1076, 1164
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	1060
Cfr13I	GGNCC	2 cut(s)	734, 1063
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	5 cut(s)	23, 511, 755, 772, 1084
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	2 cut(s)	709, 1054
DpnI	GATC	2 cut(s)	27, 900
DpnII	GATC	2 cut(s)	25, 898
Eco130I	CCWWGG	1 cut(s)	912
Eco147I	AGGCCT	3 cut(s)	615, 668, 1078
Eco47I	GGWCC	1 cut(s)	1063
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	58, 450, 615
EcoT14I	CCWWGG	1 cut(s)	912
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	5 cut(s)	26, 514, 758, 775, 1087
FalI	AAGNNNNNCTT	2 cut(s)	1063, 1095
FaqI	GGGAC	3 cut(s)	76, 590, 894
FatI	CATG	5 cut(s)	22, 510, 754, 771, 1083
FauI	CCCGC	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	5 cut(s)	106, 240, 606, 792, 1020
FokI	GGATG	4 cut(s)	326, 429, 998, 1006
Fsp4HI	GCNGC	5 cut(s)	106, 240, 606, 792, 1020
FspBI	CTAG	3 cut(s)	428, 765, 1221
GlaI	GCGC	1 cut(s)	1059
GluI	GCNGC	5 cut(s)	106, 240, 606, 792, 1020
GsuI	CTGGAG	2 cut(s)	42, 780
HaeII	RGCGCY	1 cut(s)	1061
HaeIII	GGCC	6 cut(s)	615, 620, 668, 736, 822, 1078
HapII	CCGG	1 cut(s)	1061
HhaI	GCGC	1 cut(s)	1060
Hin1II	CATG	5 cut(s)	26, 514, 758, 775, 1087
Hin6I	GCGC	1 cut(s)	1058
HinP1I	GCGC	1 cut(s)	1058
HinfI	GANTC	6 cut(s)	213, 532, 749, 768, 852, 1198
HpaII	CCGG	1 cut(s)	1061
HphI	GGTGA	2 cut(s)	287, 466
Hpy166II	GTNNAC	1 cut(s)	1190
Hpy188III	TCNNGA	5 cut(s)	23, 69, 367, 401, 797
Hpy8I	GTNNAC	1 cut(s)	1190
HpyAV	CCTTC	7 cut(s)	60, 229, 342, 540, 631, 1021, 1089
HpyCH4III	ACNGT	3 cut(s)	473, 632, 1194
HpyCH4IV	ACGT	2 cut(s)	831, 907
HpyCH4V	TGCA	7 cut(s)	227, 266, 514, 701, 809, 1027, 1162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 1016
HpyF3I	CTNAG	2 cut(s)	709, 1054
HpySE526I	ACGT	2 cut(s)	831, 907
Hsp92II	CATG	5 cut(s)	26, 514, 758, 775, 1087
HspAI	GCGC	1 cut(s)	1058
Kzo9I	GATC	2 cut(s)	25, 898
LmnI	GCTCC	4 cut(s)	602, 799, 1099, 1181
Lsp1109I	GCAGC	5 cut(s)	117, 226, 617, 778, 1031
LweI	GCATC	3 cut(s)	146, 253, 451
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	3 cut(s)	428, 765, 1221
MaeII	ACGT	2 cut(s)	831, 907
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	2 cut(s)	27, 900
MboI	GATC	2 cut(s)	25, 898
MboII	GAAGA	5 cut(s)	129, 170, 208, 491, 594
MfeI	CAATTG	1 cut(s)	1103
MhlI	GDGCHC	1 cut(s)	895
MlyI	GAGTC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	5 cut(s)	39, 271, 275, 605, 679
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	1 cut(s)	1061
MspR9I	CCNGG	3 cut(s)	60, 452, 617
MunI	CAATTG	1 cut(s)	1103
MvaI	CCWGG	3 cut(s)	60, 452, 617
MwoI	GCNNNNNNNGC	2 cut(s)	602, 1016
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	2 cut(s)	25, 898
NlaIII	CATG	5 cut(s)	26, 514, 758, 775, 1087
NlaIV	GGNNCC	3 cut(s)	735, 1065, 1183
NspI	RCATGY	1 cut(s)	758
PaeR7I	CTCGAG	1 cut(s)	609
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	3 cut(s)	615, 668, 1078
PciI	ACATGT	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	5 cut(s)	532, 749, 768, 852, 1198
PflMI	CCANNNNNTGG	2 cut(s)	386, 743
PkrI	GCNGC	5 cut(s)	107, 241, 607, 793, 1021
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	832
PscI	ACATGT	1 cut(s)	754
Psp6I	CCWGG	3 cut(s)	58, 450, 615
PspGI	CCWGG	3 cut(s)	58, 450, 615
PspN4I	GGNNCC	3 cut(s)	735, 1065, 1183
PspPI	GGNCC	2 cut(s)	734, 1063
PspXI	VCTCGAGB	1 cut(s)	609
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	5 cut(s)	106, 240, 606, 792, 1020
Sau3AI	GATC	2 cut(s)	25, 898
Sau96I	GGNCC	2 cut(s)	734, 1063
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	3 cut(s)	60, 452, 617
SduI	GDGCHC	1 cut(s)	895
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	146, 253, 451
SfcI	CTRYAG	1 cut(s)	652
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	1063
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	208, 609
SmoI	CTYRAG	2 cut(s)	208, 609
SseBI	AGGCCT	3 cut(s)	615, 668, 1078
SsiI	CCGC	3 cut(s)	554, 566, 991
SspMI	CTAG	3 cut(s)	428, 765, 1221
StuI	AGGCCT	3 cut(s)	615, 668, 1078
StyD4I	CCNGG	3 cut(s)	58, 450, 615
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	3 cut(s)	473, 632, 1194
TaiI	ACGT	2 cut(s)	834, 910
TaqI	TCGA	2 cut(s)	610, 1196
TfiI	GAWTC	5 cut(s)	532, 749, 768, 852, 1198
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	2 cut(s)	115, 352
TseI	GCWGC	5 cut(s)	105, 239, 605, 791, 1019
TspDTI	ATGAA	4 cut(s)	248, 499, 1197, 1217
TspGWI	ACGGA	2 cut(s)	198, 202
TspRI	CASTG	2 cut(s)	115, 352
Van91I	CCANNNNNTGG	2 cut(s)	386, 743
VpaK11BI	GGWCC	1 cut(s)	1063
XapI	RAATTY	4 cut(s)	250, 421, 873, 1113
XceI	RCATGY	1 cut(s)	758
XhoI	CTCGAG	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	3 cut(s)	428, 765, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.