Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

8423899 .. 8426431

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTGAAACAGATCAAACCTATCGATCGGCCCTGCCAAGTTCAGATTCCGTAAGAGATATATTCTTATGGAAGAAGAAGAAACAGAGTGTGCTTCTTCTTTCGATAGCAACAGCAACATGGGTTTTGCTCAAAGTCTATCTCTTCAACTTCCTTACTGTAATTTCATGGGCGGCCATGTTTGTTGTTACTTCTCTGTTCCTCTGGGCCAACATGCTTAGGTTCTTTAACAAAGAACCTCCAAACTTGTATGGAATGTTGGAGGTAACAGAGGAGACAGCTTTGAGGACTGCGAATAGCATTCGAGCGTGGATTGAAGAAGGAATTCGATGGATGTTTTGGGTGGCTGCCGAGAGAGAGTGGTTTGTGTTTGCCGGGACCGCCGCTGGTTTGTGGTTACTCTCTCGTGTAGGGGGATACGTTGATCTGCTAACCTTTCTTTATACAGGTGTTGTTATGGGCATGACTATTCCCGTAATATATGTGAGGTACAAGGAAAATCTGAAGAGGAGCGAGGAGTGGGTGAAGGCACAGGCAAGAAGATACCATGACATGGTGGATGAAAAGGTTGTCAAGAATATAAAGAACAAGGTGACAGTCACTAATGAGAATTATAAGGACAAGAAGGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

212

Amino Acids

24.68

Weight (kDa)

9.4

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	18 - 169	1.9e-36	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB7I	CCANNNNNTGG	1 cut(s)	553
AciI	CCGC	3 cut(s)	173, 381, 384
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	2 cut(s)	148, 317
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	3 cut(s)	30, 174, 207
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	3 cut(s)	31, 207, 378
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	535, 604
AvaII	GGWCC	1 cut(s)	378
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	174, 348, 384
BlsI	GCNGC	3 cut(s)	175, 349, 385
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	31, 207, 378
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
BseCI	ATCGAT	1 cut(s)	25
BseGI	GGATG	2 cut(s)	339, 565
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseRI	GAGGAG	3 cut(s)	287, 523, 530
BseXI	GCAGC	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	32, 176, 209
BshVI	ATCGAT	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	391
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	32, 176, 209
Bsp143I	GATC	3 cut(s)	13, 26, 424
BspACI	CCGC	3 cut(s)	173, 381, 384
BspANI	GGCC	3 cut(s)	32, 176, 209
BspDI	ATCGAT	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	379
BssMI	GATC	3 cut(s)	13, 26, 424
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	160, 598
Bst6I	CTCTTC	2 cut(s)	149, 500
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	339, 565
BstKTI	GATC	3 cut(s)	16, 29, 427
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	13, 26, 424
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	32, 176, 209
BsuTUI	ATCGAT	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	339, 565
Cfr13I	GGNCC	3 cut(s)	31, 207, 378
ClaI	ATCGAT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	7 cut(s)	120, 168, 178, 214, 463, 548, 553
CviJI	RGCY	5 cut(s)	32, 176, 209, 281, 347
CviKI_1	RGCY	5 cut(s)	32, 176, 209, 281, 347
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	3 cut(s)	15, 28, 426
DpnII	GATC	3 cut(s)	13, 26, 424
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	149, 500
EarI	CTCTTC	2 cut(s)	149, 500
Eco47I	GGWCC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	324
FaeI	CATG	7 cut(s)	123, 171, 181, 217, 466, 551, 556
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	7 cut(s)	119, 167, 177, 213, 462, 547, 552
Fnu4HI	GCNGC	3 cut(s)	174, 348, 384
FokI	GGATG	2 cut(s)	346, 572
Fsp4HI	GCNGC	3 cut(s)	174, 348, 384
GluI	GCNGC	3 cut(s)	174, 348, 384
HaeIII	GGCC	3 cut(s)	32, 176, 209
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	7 cut(s)	123, 171, 181, 217, 466, 551, 556
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	535, 604
Hpy188I	TCNGA	3 cut(s)	7, 46, 504
Hpy188III	TCNNGA	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	314, 520, 619
HpyCH4III	ACNGT	2 cut(s)	160, 598
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	7 cut(s)	123, 171, 181, 217, 466, 551, 556
Kzo9I	GATC	3 cut(s)	13, 26, 424
LmnI	GCTCC	1 cut(s)	510
LpnPI	CCDG	6 cut(s)	47, 190, 372, 388, 432, 518
Lsp1109I	GCAGC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	5 cut(s)	187, 265, 396, 592, 598
MalI	GATC	3 cut(s)	15, 28, 426
MboI	GATC	3 cut(s)	13, 26, 424
MboII	GAAGA	8 cut(s)	85, 88, 89, 91, 136, 329, 517, 552
MluCI	AATT	3 cut(s)	162, 324, 610
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	212, 249, 256, 265, 279, 480, 501, 508
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	3 cut(s)	13, 26, 424
NlaIII	CATG	7 cut(s)	123, 171, 181, 217, 466, 551, 556
NlaIV	GGNNCC	1 cut(s)	379
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	592, 598
NspI	RCATGY	1 cut(s)	217
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	3 cut(s)	175, 349, 385
Ple19I	CGATCG	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	3 cut(s)	31, 207, 378
PvuI	CGATCG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	174, 348, 384
Sau3AI	GATC	3 cut(s)	13, 26, 424
Sau96I	GGNCC	3 cut(s)	31, 207, 378
ScrFI	CCNGG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	378
Sse9I	AATT	3 cut(s)	162, 324, 610
SsiI	CCGC	3 cut(s)	173, 381, 384
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	160, 598
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	4 cut(s)	25, 104, 304, 328
TasI	AATT	3 cut(s)	162, 324, 610
TauI	GCSGC	2 cut(s)	176, 386
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	592, 598
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	592, 598
TspDTI	ATGAA	2 cut(s)	156, 576
TspGWI	ACGGA	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.