Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000257.1

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Reverse (-)

99768 .. 101385

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000257.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgaatccggtagaaaacctaaccgcaccaccaaatccaattgatgtgttggaaatatgtcctttttgcactaatttgggttgctcggccataacttgctatttgggcctagcacgggagatcttatccatgaaggcttgcatggtttccacgtttctatgcattaggtctacgttcgtcaacatgtctgaaacagatcaaacatatcaatcgcccctgcccagttcagatactgtaagagatatattcctatggaagaagaagaaacagagtgttcttgttctttcgatagcaacagcaatatggattttgctcaaagtctatcgtttcaacttcctgactgtaatttcatgggcggcgatgtttattgttacttctttgttcgtttggggcaacatgcttaggttctttaacaaagaacctccaaatttgtatggaatgttggaggtaactgaggagacggctttggggactgcgaataacattcgagcatggattgaagaaggaattcgatggatgtttcgtgtggccgcggagagactgtggtttgtatttgccgggactgtcacaggcgtggttatgggcatgactattcctgtgatacatgcgaggtacaaggaaaatctcaagaggagtgaggagtgggtgaaggcacaggcaagaatgtactatgacatggtggatgaaaaggtagtcaagaatataaagaacaaggtgacggtcaccaaagagaattataaggacaagaaggtagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

252

Amino Acids

28.99

Weight (kDa)

8.96

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	1 cut(s)	533
AciI	CCGC	4 cut(s)	24, 356, 531, 533
AcoI	YGGCCR	2 cut(s)	87, 528
AcsI	RAATTY	2 cut(s)	427, 507
AfaI	GTAC	2 cut(s)	614, 668
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	331, 500
AleI	CACNNNNGTG	1 cut(s)	572
Alw26I	GTCTC	2 cut(s)	452, 532
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	87, 106, 528
ApoI	RAATTY	2 cut(s)	427, 507
Asp700I	GAANNNNTTC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	658, 715, 727
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	2 cut(s)	452, 532
BfaI	CTAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	2 cut(s)	357, 531
BlsI	GCNGC	2 cut(s)	358, 532
Bme1390I	CCNGG	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	559
BmrI	ACTGGG	1 cut(s)	216
BmuI	ACTGGG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	531
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	522, 688
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	3 cut(s)	470, 646, 653
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	3 cut(s)	89, 108, 530
BsiSI	CCGG	2 cut(s)	8, 558
BslFI	GGGAC	2 cut(s)	484, 574
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	452, 532
BsmBI	CGTCTC	1 cut(s)	452
BsmFI	GGGAC	2 cut(s)	484, 574
BsnI	GGCC	3 cut(s)	89, 108, 530
Bsp143I	GATC	2 cut(s)	120, 196
BspACI	CCGC	4 cut(s)	24, 356, 531, 533
BspANI	GGCC	3 cut(s)	89, 108, 530
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	120, 196
Bst4CI	ACNGT	5 cut(s)	235, 343, 543, 565, 721
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	401, 453
BstDSI	CCRYGG	1 cut(s)	531
BstEII	GGTNACC	1 cut(s)	721
BstF5I	GGATG	2 cut(s)	522, 688
BstFNI	CGCG	1 cut(s)	533
BstKTI	GATC	2 cut(s)	123, 199
BstMAI	GTCTC	2 cut(s)	452, 532
BstMBI	GATC	2 cut(s)	120, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	3 cut(s)	187, 400, 608
BstPI	GGTNACC	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	89, 108, 530
BtgI	CCRYGG	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	522, 688
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	106
Cfr42I	CCGCGG	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	613, 667
CviAII	CATG	9 cut(s)	130, 142, 184, 351, 397, 492, 586, 605, 676
CviJI	RGCY	5 cut(s)	89, 108, 137, 464, 530
CviKI_1	RGCY	5 cut(s)	89, 108, 137, 464, 530
CviQI	GTAC	2 cut(s)	613, 667
DdeI	CTNAG	2 cut(s)	401, 453
DpnI	GATC	2 cut(s)	122, 198
DpnII	GATC	2 cut(s)	120, 196
EaeI	YGGCCR	2 cut(s)	87, 528
Eco91I	GGTNACC	1 cut(s)	721
EcoO65I	GGTNACC	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	507
EcoT22I	ATGCAT	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	9 cut(s)	133, 145, 187, 354, 400, 495, 589, 608, 679
FaqI	GGGAC	2 cut(s)	484, 574
FatI	CATG	9 cut(s)	129, 141, 183, 350, 396, 491, 585, 604, 675
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	357, 531
FokI	GGATG	2 cut(s)	529, 695
Fsp4HI	GCNGC	2 cut(s)	357, 531
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	357, 531
HaeIII	GGCC	3 cut(s)	89, 108, 530
HapII	CCGG	2 cut(s)	8, 558
Hin1II	CATG	9 cut(s)	133, 145, 187, 354, 400, 495, 589, 608, 679
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	8, 558
HphI	GGTGA	3 cut(s)	658, 715, 727
Hpy166II	GTNNAC	2 cut(s)	171, 181
Hpy188I	TCNGA	2 cut(s)	190, 229
Hpy188III	TCNNGA	3 cut(s)	337, 628, 697
Hpy8I	GTNNAC	2 cut(s)	171, 181
HpyAV	CCTTC	4 cut(s)	127, 497, 643, 742
HpyCH4III	ACNGT	5 cut(s)	235, 343, 543, 565, 721
HpyCH4IV	ACGT	2 cut(s)	152, 173
HpyCH4V	TGCA	3 cut(s)	69, 141, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	401, 453
HpySE526I	ACGT	2 cut(s)	152, 173
Hsp92II	CATG	9 cut(s)	133, 145, 187, 354, 400, 495, 589, 608, 679
KspI	CCGCGG	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	120, 196
LpnPI	CCDG	8 cut(s)	21, 230, 235, 350, 555, 571, 609, 641
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	152, 173
MaeIII	GTNAC	5 cut(s)	370, 448, 565, 715, 721
MalI	GATC	2 cut(s)	122, 198
MboI	GATC	2 cut(s)	120, 196
MboII	GAAGA	4 cut(s)	268, 271, 274, 512
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	120
MluCI	AATT	6 cut(s)	39, 73, 345, 427, 507, 733
MmeI	TCCRAC	2 cut(s)	30, 423
MnlI	CCTC	6 cut(s)	432, 439, 448, 603, 624, 631
Mph1103I	ATGCAT	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	2 cut(s)	8, 558
MspR9I	CCNGG	1 cut(s)	559
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	2 cut(s)	120, 196
NlaIII	CATG	9 cut(s)	133, 145, 187, 354, 400, 495, 589, 608, 679
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	3 cut(s)	565, 715, 721
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	3 cut(s)	187, 400, 608
OliI	CACNNNNGTG	1 cut(s)	572
PciI	ACATGT	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	358, 532
PscI	ACATGT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	738
PspEI	GGTNACC	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	2 cut(s)	614, 668
RsaNI	GTAC	2 cut(s)	613, 667
RseI	CAYNNNNRTG	1 cut(s)	572
SacII	CCGCGG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	357, 531
Sau3AI	GATC	2 cut(s)	120, 196
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	559
Sfr303I	CCGCGG	1 cut(s)	534
SgrBI	CCGCGG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	6 cut(s)	39, 73, 345, 427, 507, 733
SsiI	CCGC	4 cut(s)	24, 356, 531, 533
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	557
TaaI	ACNGT	5 cut(s)	235, 343, 543, 565, 721
TaiI	ACGT	2 cut(s)	155, 176
TaqI	TCGA	3 cut(s)	287, 487, 511
TasI	AATT	6 cut(s)	39, 73, 345, 427, 507, 733
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	2 cut(s)	359, 533
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	3 cut(s)	565, 715, 721
Tsp45I	GTSAC	3 cut(s)	565, 715, 721
TspDTI	ATGAA	4 cut(s)	17, 146, 339, 699
XapI	RAATTY	2 cut(s)	427, 507
XceI	RCATGY	3 cut(s)	187, 400, 608
XmiI	GTMKAC	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.