Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Reverse (-)

77489665 .. 77491027

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCTGAAACAGATCAAACATATCAATCGCCCCTGCCCAGTTCAGATACTGTAAGAGATATATTCCTATGGAAGAAGAAGAAACAGAGTGTTCTTGTTCTTTTGATAGCAACAGCAATATGGGTTTTGCTCAAAGTCTATCGTTTCAACTTCCTGACTGTAATTTCATGGGCGGCGATGTTTATTGTTACTTCTTTGTTCCTTTGGGGCAACATGCTTAGGGAACCTCCAAATTTGTATGGAATGTTGGAGGTAACTGAGGAGACGGCTTTGGAGACTGCGAATACCATTGGAGCATGGATTGAAGAAGGAATTCGATGGATGTTTCGTGTGGCCGCGGAGAGAGAGTGGTTTGTATTTGCCGGGACAGCCACAGGTTTATGGTTACTCTCTCGTGTAGGGAGATACTTTGATCTGCTCACCCTTCTTTATACAGGCGTGGTTATGGGCATGACTATTCCTGTGATATATGCGAGGTACAAGGAAAATCTCAAGAGGAGTGAGGAGTGGGTGAAGGCACAGGCAAGAAGGTACTATGACATGGTGGATGAAAAGGTAGTCAAGAATATAAAGAACAAGGTGACGGTCACCAAAGAGAATTATAAGGACAAGAAGGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

207

Amino Acids

24.23

Weight (kDa)

9.26

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	18 - 165	1.3e-37	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AccII	CGCG	1 cut(s)	338
AciI	CCGC	3 cut(s)	173, 336, 338
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	232, 312
AfaI	GTAC	2 cut(s)	479, 533
AgsI	TTSAA	2 cut(s)	148, 305
Alw26I	GTCTC	2 cut(s)	257, 269
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	333
ApoI	RAATTY	2 cut(s)	232, 312
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	412, 523, 580, 592
BauI	CACGAG	1 cut(s)	393
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	257, 269
BisI	GCNGC	2 cut(s)	174, 336
BlsI	GCNGC	2 cut(s)	175, 337
Bme1390I	CCNGG	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse1I	ACTGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	327, 553
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	275, 511, 518
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	379
BsmAI	GTCTC	2 cut(s)	257, 269
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	13, 412
BspACI	CCGC	3 cut(s)	173, 336, 338
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	13, 412
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst4CI	ACNGT	3 cut(s)	52, 160, 586
BstDEI	CTNAG	2 cut(s)	218, 258
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	327, 553
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	16, 415
BstMAI	GTCTC	2 cut(s)	257, 269
BstMBI	GATC	2 cut(s)	13, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	327, 553
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	478, 532
CviAII	CATG	5 cut(s)	168, 214, 297, 451, 541
CviJI	RGCY	3 cut(s)	269, 335, 371
CviKI_1	RGCY	3 cut(s)	269, 335, 371
CviQI	GTAC	2 cut(s)	478, 532
DdeI	CTNAG	2 cut(s)	218, 258
DpnI	GATC	2 cut(s)	15, 414
DpnII	GATC	2 cut(s)	13, 412
EaeI	YGGCCR	1 cut(s)	333
Eco91I	GGTNACC	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	5 cut(s)	171, 217, 300, 454, 544
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	5 cut(s)	167, 213, 296, 450, 540
Fnu4HI	GCNGC	2 cut(s)	174, 336
FokI	GGATG	2 cut(s)	334, 560
Fsp4HI	GCNGC	2 cut(s)	174, 336
GluI	GCNGC	2 cut(s)	174, 336
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	5 cut(s)	171, 217, 300, 454, 544
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	4 cut(s)	412, 523, 580, 592
Hpy188I	TCNGA	2 cut(s)	7, 46
Hpy188III	TCNNGA	3 cut(s)	154, 493, 562
HpyAV	CCTTC	5 cut(s)	302, 434, 508, 522, 607
HpyCH4III	ACNGT	3 cut(s)	52, 160, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	218, 258
Hsp92II	CATG	5 cut(s)	171, 217, 300, 454, 544
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	13, 412
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	8 cut(s)	47, 52, 167, 360, 376, 420, 474, 506
MaeIII	GTNAC	5 cut(s)	187, 253, 384, 580, 586
MalI	GATC	2 cut(s)	15, 414
MboI	GATC	2 cut(s)	13, 412
MboII	GAAGA	4 cut(s)	85, 88, 91, 317
MluCI	AATT	4 cut(s)	162, 232, 312, 598
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	237, 244, 253, 468, 489, 496
MroXI	GAANNNNTTC	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	2 cut(s)	13, 412
NlaIII	CATG	5 cut(s)	171, 217, 300, 454, 544
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	580, 586
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	175, 337
PsiI	TTATAA	1 cut(s)	603
PspEI	GGTNACC	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	479, 533
RsaNI	GTAC	2 cut(s)	478, 532
SacII	CCGCGG	1 cut(s)	339
SatI	GCNGC	2 cut(s)	174, 336
Sau3AI	GATC	2 cut(s)	13, 412
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	8 cut(s)	229, 255, 379, 479, 533, 558, 582, 618
Sfr303I	CCGCGG	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	162, 232, 312, 598
SsiI	CCGC	3 cut(s)	173, 336, 338
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	52, 160, 586
TaqI	TCGA	1 cut(s)	316
TasI	AATT	4 cut(s)	162, 232, 312, 598
TauI	GCSGC	2 cut(s)	176, 338
TseFI	GTSAC	2 cut(s)	580, 586
Tsp45I	GTSAC	2 cut(s)	580, 586
TspDTI	ATGAA	2 cut(s)	156, 564
XapI	RAATTY	2 cut(s)	232, 312
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.