Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

15703250 .. 15705992

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTGAAACAGATCAAACATACCAATCGCCCCTGCCCAGTTCAGATACTGTAAGTGATATATTCCTATGGAAGAAGAAGAAACAGAGTGTTCTTGTTCTTTCGATAGCAACAGCAATATGGGTTTTGCTCAAAGTCTATCGTTTCAACTTCCTGACTGTAATTTCATGGGCGGCGATGTTTATTGTTACTTCTTTGTTCGTTTGGGGCAACATGCTTAGGTTCTTTAACAAAGAACCTCCAAATTTGTATGGAATGTTGGAGGTAACTGAGGAGACGGCTTTGGGGACTGCGAATACCATTCGAGCATGGATTGAAGAAGGAATTCGATGGATGTTTCGGAGATACTTTGATCTGCTCACCGTTCTTTATACAGGCGTGGTTATGGGCATGACTATTCCTGTGATATATGCGAGGTACAAGGAAAATCTCAAGAGGAGTGAGGAGTGGGTGAAGGCACAGGCAAGAAGGTACTATGACATGGTGGATGAAAAGGTAGTCAAGAATATAAAGAACAAGGTGACGGTCACCAAAGAGAATTATAAGGACAAGAAGGTGGGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

188

Amino Acids

22.11

Weight (kDa)

9.54

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	18 - 113	4.6e-19	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	244, 324
AfaI	GTAC	2 cut(s)	419, 473
AgsI	TTSAA	2 cut(s)	148, 317
Alw26I	GTCTC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	244, 324
Asp700I	GAANNNNTTC	1 cut(s)	324
AsuHPI	GGTGA	4 cut(s)	352, 463, 520, 532
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	339, 493
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	287, 451, 458
BslFI	GGGAC	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	13, 352
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	13, 352
Bst4CI	ACNGT	4 cut(s)	52, 160, 364, 526
BstDEI	CTNAG	2 cut(s)	218, 270
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	339, 493
BstKTI	GATC	2 cut(s)	16, 355
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	13, 352
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	526
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	339, 493
CaiI	CAGNNNCTG	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	418, 472
CviAII	CATG	5 cut(s)	168, 214, 309, 391, 481
CviJI	RGCY	1 cut(s)	281
CviKI_1	RGCY	1 cut(s)	281
CviQI	GTAC	2 cut(s)	418, 472
DdeI	CTNAG	2 cut(s)	218, 270
DpnI	GATC	2 cut(s)	15, 354
DpnII	GATC	2 cut(s)	13, 352
Eco91I	GGTNACC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	5 cut(s)	171, 217, 312, 394, 484
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	5 cut(s)	167, 213, 308, 390, 480
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	2 cut(s)	346, 500
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	171, 217, 312, 394, 484
HphI	GGTGA	4 cut(s)	352, 463, 520, 532
Hpy188I	TCNGA	3 cut(s)	7, 46, 342
Hpy188III	TCNNGA	3 cut(s)	154, 433, 502
HpyAV	CCTTC	4 cut(s)	314, 448, 462, 547
HpyCH4III	ACNGT	4 cut(s)	52, 160, 364, 526
HpyF3I	CTNAG	2 cut(s)	218, 270
Hsp92II	CATG	5 cut(s)	171, 217, 312, 394, 484
Kzo9I	GATC	2 cut(s)	13, 352
LpnPI	CCDG	6 cut(s)	47, 52, 167, 360, 414, 446
MaeIII	GTNAC	4 cut(s)	187, 265, 520, 526
MalI	GATC	2 cut(s)	15, 354
MboI	GATC	2 cut(s)	13, 352
MboII	GAAGA	4 cut(s)	85, 88, 91, 329
MluCI	AATT	4 cut(s)	162, 244, 324, 538
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	249, 256, 265, 408, 429, 436
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	228
NdeII	GATC	2 cut(s)	13, 352
NlaIII	CATG	5 cut(s)	171, 217, 312, 394, 484
NmuCI	GTSAC	2 cut(s)	520, 526
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	175
PsiI	TTATAA	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	419, 473
RsaNI	GTAC	2 cut(s)	418, 472
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	13, 352
SetI	ASST	8 cut(s)	224, 241, 267, 419, 473, 498, 522, 558
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	162, 244, 324, 538
SsiI	CCGC	1 cut(s)	173
TaaI	ACNGT	4 cut(s)	52, 160, 364, 526
TaqI	TCGA	3 cut(s)	104, 304, 328
TasI	AATT	4 cut(s)	162, 244, 324, 538
TauI	GCSGC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	520, 526
Tsp45I	GTSAC	2 cut(s)	520, 526
TspDTI	ATGAA	2 cut(s)	156, 504
XapI	RAATTY	2 cut(s)	244, 324
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.