Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

15536472 .. 15538459

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG175300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGATTTGGTGCAGATACCGTAAGAGATATATTCCTATGGAAGAAGAAGAAACAGAGTGTTCTTGTTCTTTCGATAGCAACAGCAATATGGGTTTTGCTCAAAGTCTATCGTTTCAACTTCCTGACTGTAATTTCATGGGCGGCGATGTTTATTGTTACTTCTTTGTTCGTTTGGGCCAACATGCTTAGGTTCTTTAACAAAGAACCTCCAAATTTGTATGGAATGTTGGAGGTAACTGAGGAGACGGCTTTGGGGACTGCGAATACCATTCGAGCATGGATTGAAGAAGGAATTCGATGGATGTTTCGTGTGGCCGCGGAGAGAGAGTGGTTTGTATTTGCCGGGACTGCCACAGGTTTATGGTTATTCTCTCGTGTAGGGAGATACTTTGATCTGCTCACCGTTCTTTATACAGGTAACACATGTTCCTGTGATTTACTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

149

Amino Acids

17.23

Weight (kDa)

9.03

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	8 - 144	2.1e-31	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	320
AciI	CCGC	3 cut(s)	143, 318, 320
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	214, 294
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	118, 287
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	177, 315
ApoI	RAATTY	2 cut(s)	214, 294
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	394
BauI	CACGAG	1 cut(s)	375
BccI	CCATC	1 cut(s)	294
BceAI	ACGGC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	144, 318
BlsI	GCNGC	2 cut(s)	145, 319
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	179, 317
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	2 cut(s)	271, 361
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	271, 361
BsnI	GGCC	2 cut(s)	179, 317
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	143, 318, 320
BspANI	GGCC	2 cut(s)	179, 317
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	22, 130, 406
BstDEI	CTNAG	2 cut(s)	188, 240
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	320
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	187, 429
BstSCI	CCNGG	1 cut(s)	344
BstUI	CGCG	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	179, 317
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	177
Cfr42I	CCGCGG	1 cut(s)	321
CviAII	CATG	4 cut(s)	138, 184, 279, 426
CviJI	RGCY	3 cut(s)	179, 251, 317
CviKI_1	RGCY	3 cut(s)	179, 251, 317
DdeI	CTNAG	2 cut(s)	188, 240
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	4 cut(s)	141, 187, 282, 429
FaqI	GGGAC	2 cut(s)	271, 361
FatI	CATG	4 cut(s)	137, 183, 278, 425
Fnu4HI	GCNGC	2 cut(s)	144, 318
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	144, 318
GluI	GCNGC	2 cut(s)	144, 318
HaeIII	GGCC	2 cut(s)	179, 317
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	4 cut(s)	141, 187, 282, 429
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	3 cut(s)	22, 130, 406
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	188, 240
Hsp92II	CATG	4 cut(s)	141, 187, 282, 429
KspI	CCGCGG	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	394
LpnPI	CCDG	5 cut(s)	137, 342, 358, 402, 445
MaeIII	GTNAC	3 cut(s)	157, 235, 419
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	4 cut(s)	55, 58, 61, 299
MluCI	AATT	3 cut(s)	132, 214, 294
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	219, 226, 235
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	4 cut(s)	141, 187, 282, 429
NspI	RCATGY	2 cut(s)	187, 429
PciI	ACATGT	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	145, 319
PscI	ACATGT	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	412, 444
SacII	CCGCGG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	144, 318
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	5 cut(s)	194, 211, 237, 361, 421
Sfr303I	CCGCGG	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	132, 214, 294
SsiI	CCGC	3 cut(s)	143, 318, 320
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	22, 130, 406
TaqI	TCGA	3 cut(s)	74, 274, 298
TasI	AATT	3 cut(s)	132, 214, 294
TauI	GCSGC	2 cut(s)	146, 320
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	126
XapI	RAATTY	2 cut(s)	214, 294
XceI	RCATGY	2 cut(s)	187, 429
XmnI	GAANNNNTTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.