Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

15459968 .. 15462255

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCTGAAACAGATCAAACATACCAATCGCCCCTGCCCAGTTCAGATACTGTAAGTGATATATTCCTATGGAAGAAGAAGAAACAGAGTGTTCTTGTTCTTTCGATAGCAACAGCAATATGGGTTTTGCTCAAAGTCTATCGTTTCAACTTCCTGACTGTAATTTCATGGGCGGCGATGTTTATTGTTACTTCTTTGTTCGTTTGGGGCAACATGCTTAGGTTCTTTAACAAAGAACCTCCAAATTTGTATGGAATGTTGGAGGTAACTGAGGAGACGGCTTTGGGGACTGCGAATACCATTCGAGCATGGATTGAAGAAGGAATTCGATGGATGTTTCGTGTGGCCGCGGAGAGAGAGTGGTTTGTATTTGCCGGGACTGCCACAGCGGCGAGGCTCTGGGTTGGTGGATGGGTTGTCGGCTCCGGGTGTAGTCGGATCAATCTCGATCTGCTACCCCGGTTCATGGAGGTTTTGCGGCGGTGGTGCAGCGACGGATCTTGGGGCTCCAGCGGTGCTCTTTTTCGCCACCATCCCTGTGTGTTGGGCTGTGGCTGTACTGATCTAGATGCGATGGTGCTGATCCCGGAAGGGACCTGGCGGGGTTGCGGCGAAGGGTTTCAACGTGATGCTGTTTTGATGCGTGACGATGGCCTGGTGGCATTGGCGTTGTTGGTGGTCGGTGGATCTGTTGGTTGTGCTTGGCCGTGGCTGGGAGTGGTGGTCTTTGGGCTGAGCCTGATTCTTGGGCCTCTCTGTGATGTTTATGTTTTTGTGGTTAGGGTTTTGGGTCTGGTCTGCTGGCGGTGCTTTCTGGCTATCAACGTGACGATGAATCACCCTTACACGTGGTCTGGCTGTTTTGGACACGGTGTCCGAACGAGTGAAAACAGTTCATCGTTTATGTTTCTGGTGAGGCGTGGTTATGGGCATGACTATTCCTGTGATATATGCGAGGTACAAGGAAAATCTCAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

327

Amino Acids

36.58

Weight (kDa)

6.23

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	18 - 142	2e-22	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	350
AclWI	GGATC	4 cut(s)	446, 505, 577, 694
AcoI	YGGCCR	2 cut(s)	345, 704
AcsI	RAATTY	2 cut(s)	244, 324
AcvI	CACGTG	1 cut(s)	849
AfaI	GTAC	2 cut(s)	559, 960
AfiI	CCNNNNNNNGG	2 cut(s)	466, 713
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	3 cut(s)	148, 317, 623
AhdI	GACNNNNNGTC	1 cut(s)	872
AjnI	CCWGG	2 cut(s)	596, 654
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	4 cut(s)	446, 505, 577, 694
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	4 cut(s)	345, 652, 704, 749
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	2 cut(s)	244, 324
Asp700I	GAANNNNTTC	2 cut(s)	324, 618
AspS9I	GGNCC	2 cut(s)	594, 749
AsuC2I	CCSGG	4 cut(s)	376, 427, 460, 587
AsuHPI	GGTGA	2 cut(s)	830, 925
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	509
BbrPI	CACGTG	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	5 cut(s)	324, 405, 540, 568, 644
BceAI	ACGGC	2 cut(s)	294, 691
BciT130I	CCWGG	2 cut(s)	598, 656
BcnI	CCSGG	4 cut(s)	376, 427, 460, 587
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	6 cut(s)	174, 348, 390, 479, 490, 610
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	6 cut(s)	175, 349, 391, 480, 491, 611
Bme1390I	CCNGG	6 cut(s)	376, 427, 460, 587, 598, 656
Bme18I	GGWCC	1 cut(s)	594
BmeRI	GACNNNNNGTC	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	594, 749
BmiI	GGNNCC	3 cut(s)	424, 508, 595
BmrFI	CCNGG	6 cut(s)	376, 427, 460, 587, 598, 656
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	3 cut(s)	559, 619, 630
BmuI	ACTGGG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	957
BpuMI	CCSGG	4 cut(s)	376, 427, 460, 587
BsaAI	YACGTR	1 cut(s)	849
BsaJI	CCNNGG	3 cut(s)	348, 458, 707
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 708, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 713
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	598, 656
BseDI	CCNNGG	3 cut(s)	348, 458, 707
BseGI	GGATG	3 cut(s)	339, 416, 532
BseLI	CCNNNNNNNGG	2 cut(s)	466, 713
BseMII	CTCAG	2 cut(s)	261, 725
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	501
BseYI	CCCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	4 cut(s)	347, 654, 706, 751
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	4 cut(s)	375, 426, 460, 587
BslFI	GGGAC	3 cut(s)	301, 391, 607
BslI	CCNNNNNNNGG	2 cut(s)	466, 713
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	3 cut(s)	301, 391, 607
BsnI	GGCC	4 cut(s)	347, 654, 706, 751
Bsp1286I	GDGCHC	2 cut(s)	509, 520
Bsp143I	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
Bsp1720I	GCTNAGC	1 cut(s)	734
BspANI	GGCC	4 cut(s)	347, 654, 706, 751
BspCNI	CTCAG	2 cut(s)	262, 726
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	3 cut(s)	424, 508, 595
BspPI	GGATC	4 cut(s)	446, 505, 577, 694
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	348, 458, 707
BssMI	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
Bst2UI	CCWGG	2 cut(s)	598, 656
Bst4CI	ACNGT	4 cut(s)	52, 160, 872, 893
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	3 cut(s)	218, 270, 734
BstDSI	CCRYGG	2 cut(s)	348, 707
BstF5I	GGATG	3 cut(s)	339, 416, 532
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	7 cut(s)	16, 441, 451, 500, 565, 585, 689
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 389, 807
BstNI	CCWGG	2 cut(s)	598, 656
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	6 cut(s)	374, 425, 458, 585, 596, 654
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	497, 686
BstYI	RGATCY	2 cut(s)	497, 686
BsuRI	GGCC	4 cut(s)	347, 654, 706, 751
BtgI	CCRYGG	2 cut(s)	348, 707
BtgZI	GCGATG	2 cut(s)	191, 587
BtsCI	GGATG	3 cut(s)	339, 416, 532
Cac8I	GCNNGC	1 cut(s)	803
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	594, 749
Cfr42I	CCGCGG	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	558, 959
CviAII	CATG	5 cut(s)	168, 214, 309, 466, 932
CviQI	GTAC	2 cut(s)	558, 959
DdeI	CTNAG	3 cut(s)	218, 270, 734
DpnI	GATC	7 cut(s)	15, 440, 450, 499, 564, 584, 688
DpnII	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
DriI	GACNNNNNGTC	1 cut(s)	872
EaeI	YGGCCR	2 cut(s)	345, 704
Eam1105I	GACNNNNNGTC	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	594
Eco72I	CACGTG	1 cut(s)	849
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	596, 654
EcoT38I	GRGCYC	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	5 cut(s)	171, 217, 312, 469, 935
FaqI	GGGAC	3 cut(s)	301, 391, 607
FatI	CATG	5 cut(s)	167, 213, 308, 465, 931
FauI	CCCGC	1 cut(s)	594
Fnu4HI	GCNGC	6 cut(s)	174, 348, 390, 479, 490, 610
FokI	GGATG	3 cut(s)	346, 423, 519
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	6 cut(s)	174, 348, 390, 479, 490, 610
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	6 cut(s)	174, 348, 390, 479, 490, 610
GsaI	CCCAGC	1 cut(s)	716
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	4 cut(s)	347, 654, 706, 751
HapII	CCGG	4 cut(s)	375, 426, 460, 587
Hin1II	CATG	5 cut(s)	171, 217, 312, 469, 935
HinfI	GANTC	2 cut(s)	742, 835
HpaII	CCGG	4 cut(s)	375, 426, 460, 587
HphI	GGTGA	2 cut(s)	830, 925
Hpy188I	TCNGA	4 cut(s)	7, 46, 438, 878
Hpy188III	TCNNGA	4 cut(s)	154, 446, 566, 974
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	3 cut(s)	314, 584, 608
HpyCH4III	ACNGT	4 cut(s)	52, 160, 872, 893
HpyCH4IV	ACGT	3 cut(s)	625, 825, 848
HpyCH4V	TGCA	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 389, 807
HpyF3I	CTNAG	3 cut(s)	218, 270, 734
HpySE526I	ACGT	3 cut(s)	625, 825, 848
Hsp92II	CATG	5 cut(s)	171, 217, 312, 469, 935
KspI	CCGCGG	1 cut(s)	351
Kzo9I	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
LmnI	GCTCC	2 cut(s)	428, 512
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	3 cut(s)	559, 619, 630
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	3 cut(s)	625, 825, 848
MaeIII	GTNAC	4 cut(s)	187, 265, 644, 826
MalI	GATC	7 cut(s)	15, 440, 450, 499, 564, 584, 688
MboI	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
MboII	GAAGA	4 cut(s)	85, 88, 91, 329
MflI	RGATCY	2 cut(s)	497, 686
MhlI	GDGCHC	2 cut(s)	509, 520
MluCI	AATT	3 cut(s)	162, 244, 324
MmeI	TCCRAC	2 cut(s)	240, 416
MnlI	CCTC	9 cut(s)	249, 256, 265, 387, 463, 762, 909, 949, 970
MroXI	GAANNNNTTC	2 cut(s)	324, 618
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	537
MspA1I	CMGCKG	3 cut(s)	350, 389, 513
MspI	CCGG	4 cut(s)	375, 426, 460, 587
MspR9I	CCNGG	6 cut(s)	376, 427, 460, 587, 598, 656
MvaI	CCWGG	2 cut(s)	598, 656
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	380, 389, 807
NciI	CCSGG	4 cut(s)	376, 427, 460, 587
NdeII	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
NlaIII	CATG	5 cut(s)	171, 217, 312, 469, 935
NlaIV	GGNNCC	3 cut(s)	424, 508, 595
NmuCI	GTSAC	2 cut(s)	644, 826
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	2 cut(s)	324, 618
PfeI	GAWTC	2 cut(s)	742, 835
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	6 cut(s)	175, 349, 391, 480, 491, 611
PmaCI	CACGTG	1 cut(s)	849
PmlI	CACGTG	1 cut(s)	849
Ppu21I	YACGTR	1 cut(s)	849
PpuMI	RGGWCCY	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	596, 654
PspCI	CACGTG	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	2 cut(s)	596, 654
PspN4I	GGNNCC	3 cut(s)	424, 508, 595
PspPI	GGNCC	2 cut(s)	594, 749
PspPPI	RGGWCCY	1 cut(s)	594
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	497, 686
RsaI	GTAC	2 cut(s)	559, 960
RsaNI	GTAC	2 cut(s)	558, 959
RseI	CAYNNNNRTG	1 cut(s)	537
SacII	CCGCGG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	6 cut(s)	174, 348, 390, 479, 490, 610
Sau3AI	GATC	7 cut(s)	13, 438, 448, 497, 562, 582, 686
Sau96I	GGNCC	2 cut(s)	594, 749
ScrFI	CCNGG	6 cut(s)	376, 427, 460, 587, 598, 656
SduI	GDGCHC	2 cut(s)	509, 520
SetI	ASST	9 cut(s)	224, 241, 267, 474, 599, 628, 828, 851, 960
SfaNI	GCATC	3 cut(s)	559, 619, 630
Sfr303I	CCGCGG	1 cut(s)	351
SgrBI	CCGCGG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	537
SmlI	CTYRAG	1 cut(s)	972
SmoI	CTYRAG	1 cut(s)	972
Sse9I	AATT	3 cut(s)	162, 244, 324
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	6 cut(s)	374, 425, 458, 585, 596, 654
TaaI	ACNGT	4 cut(s)	52, 160, 872, 893
TaiI	ACGT	3 cut(s)	628, 828, 851
TaqI	TCGA	4 cut(s)	104, 304, 328, 447
TasI	AATT	3 cut(s)	162, 244, 324
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	5 cut(s)	176, 350, 392, 481, 612
TfiI	GAWTC	2 cut(s)	742, 835
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	644, 826
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	2 cut(s)	644, 826
TspDTI	ATGAA	4 cut(s)	156, 454, 848, 885
TspGWI	ACGGA	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	2 cut(s)	244, 324
XbaI	TCTAGA	1 cut(s)	565
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	2 cut(s)	324, 618
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.