Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Reverse (-)

41241574 .. 41244751

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTACAACGCAGAGAGAAGACGGGCAAGAGACAGTCATGATCAAGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGTTATATTGGAGAGTTTGAGTATGTTGATGACCACGTATCCGGAAAGATCGTGGTTGAACTCAATGGGAGGCCGAACAAGTGTGGGGTTATCTCGTCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGCCGGACGGCTAGACTTCTTCCGTCAAGACAGTTTGCCCTTGTTAGCTCATCACCTCACTTTGTTCTTGGGACCCTTCCAAGAGGCCAACAATGCAGAGGCCCTCCAAGACCCTTTCTTCCAGGTGTGCAGCGCAAATTGGATATGGCTAACCAGGATGCTAAAAAGAATGATAAATACTTGAAGAGCTCGCCAATCAACAAAAATATCGGCCCCCCGGAAAGAGCAGTCCTAGTGAGTGGATGCATTATTGTGATTGTGGAATCCCCGAAGGTGGTTAGCTTGCAAGGATTTGCCGCAATTTTGGAGCCTAACCTCTGCAGAATTGGTACTCTTAATGATGGAAGAGTAATTGCCGTGAAGCAATTGTCTGCAGCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

198

Amino Acids

21.95

Weight (kDa)

10.23

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	510
AfaI	GTAC	2 cut(s)	5, 544
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	142, 212, 397
AjnI	CCWGG	2 cut(s)	334, 366
AluBI	AGCT	3 cut(s)	261, 402, 495
AluI	AGCT	3 cut(s)	261, 402, 495
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	24
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	5 cut(s)	154, 214, 298, 313, 424
ApeKI	GCWGC	2 cut(s)	343, 587
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	285, 314, 425
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	2 cut(s)	237, 554
BciT130I	CCWGG	2 cut(s)	336, 368
BciVI	GTATCC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	3 cut(s)	225, 446, 595
BfmI	CTRYAG	2 cut(s)	532, 585
BfuI	GTATCC	1 cut(s)	132
BisI	GCNGC	3 cut(s)	344, 510, 588
BlsI	GCNGC	3 cut(s)	345, 511, 589
Bme1390I	CCNGG	3 cut(s)	336, 368, 431
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	285, 314, 425
BmiI	GGNNCC	4 cut(s)	286, 287, 427, 522
BmrFI	CCNGG	3 cut(s)	336, 368, 431
BmsI	GCATC	2 cut(s)	361, 446
BpiI	GAAGAC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	55, 429
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	336, 368
BseDI	CCNNGG	2 cut(s)	55, 429
BseGI	GGATG	3 cut(s)	376, 461, 590
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	156, 216, 300, 315, 426
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	125, 217, 431
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	5 cut(s)	156, 216, 300, 315, 426
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	40, 131
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	5 cut(s)	156, 216, 300, 315, 426
BspEI	TCCGGA	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	286, 287, 427, 522
BspMAI	CTGCAG	2 cut(s)	536, 589
BspQI	GCTCTTC	1 cut(s)	392
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	2 cut(s)	55, 429
BssMI	GATC	2 cut(s)	40, 131
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	336, 368
Bst4CI	ACNGT	2 cut(s)	35, 246
Bst6I	CTCTTC	2 cut(s)	392, 553
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	404, 497
BstF5I	GGATG	3 cut(s)	376, 461, 590
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	43, 134
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	40, 131
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	2 cut(s)	336, 368
BstSCI	CCNGG	3 cut(s)	334, 366, 429
BstSFI	CTRYAG	2 cut(s)	532, 585
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	156, 216, 300, 315, 426
BtsCI	GGATG	3 cut(s)	376, 461, 590
Cac8I	GCNNGC	2 cut(s)	404, 497
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	3 cut(s)	285, 314, 425
Csp6I	GTAC	2 cut(s)	4, 543
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	2 cut(s)	4, 543
DpnI	GATC	2 cut(s)	42, 133
DpnII	GATC	2 cut(s)	40, 131
Eam1104I	CTCTTC	2 cut(s)	392, 553
EarI	CTCTTC	2 cut(s)	392, 553
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	402
EcoO109I	RGGNCCY	2 cut(s)	285, 314
EcoRII	CCWGG	2 cut(s)	334, 366
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	41
FaiI	YATR	5 cut(s)	39, 84, 89, 107, 359
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	344, 510, 588
FokI	GGATG	3 cut(s)	383, 468, 577
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	3 cut(s)	344, 510, 588
FspBI	CTAG	3 cut(s)	225, 446, 595
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	344, 510, 588
HaeIII	GGCC	5 cut(s)	156, 216, 300, 315, 426
HapII	CCGG	3 cut(s)	125, 217, 431
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	3 cut(s)	125, 217, 431
HphI	GGTGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	38, 125, 240
HpyAV	CCTTC	4 cut(s)	58, 206, 299, 478
HpyCH4III	ACNGT	2 cut(s)	35, 246
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	6 cut(s)	309, 343, 459, 499, 534, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	346
KflI	GGGWCCC	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	40, 131
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	7 cut(s)	138, 230, 321, 348, 353, 380, 444
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	361, 446
MaeI	CTAG	3 cut(s)	225, 446, 595
MaeII	ACGT	1 cut(s)	119
MalI	GATC	2 cut(s)	42, 133
MboI	GATC	2 cut(s)	40, 131
MboII	GAAGA	5 cut(s)	30, 224, 323, 409, 570
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	5 cut(s)	350, 513, 537, 564, 578
MnlI	CCTC	7 cut(s)	146, 192, 279, 290, 305, 327, 539
Mph1103I	ATGCAT	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	124
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	3 cut(s)	125, 217, 431
MspR9I	CCNGG	3 cut(s)	336, 368, 431
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	2 cut(s)	336, 368
MwoI	GCNNNNNNNGC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	2 cut(s)	40, 131
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	4 cut(s)	286, 287, 427, 522
NsiI	ATGCAT	1 cut(s)	461
PagI	TCATGA	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	3 cut(s)	345, 511, 589
Ppu21I	YACGTR	1 cut(s)	120
PpuMI	RGGWCCY	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	334, 366
PspGI	CCWGG	2 cut(s)	334, 366
PspN4I	GGNNCC	4 cut(s)	286, 287, 427, 522
PspPI	GGNCC	3 cut(s)	285, 314, 425
PspPPI	RGGWCCY	1 cut(s)	285
PstI	CTGCAG	2 cut(s)	536, 589
RsaI	GTAC	2 cut(s)	5, 544
RsaNI	GTAC	2 cut(s)	4, 543
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	344, 510, 588
Sau3AI	GATC	2 cut(s)	40, 131
Sau96I	GGNCC	3 cut(s)	285, 314, 425
ScrFI	CCNGG	3 cut(s)	336, 368, 431
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	9 cut(s)	61, 122, 263, 271, 340, 404, 489, 497, 531
SfaNI	GCATC	2 cut(s)	361, 446
SfcI	CTRYAG	2 cut(s)	532, 585
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	350, 513, 537, 564, 578
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	3 cut(s)	225, 446, 595
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	334, 366, 429
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	35, 246
TaiI	ACGT	1 cut(s)	122
TasI	AATT	5 cut(s)	350, 513, 537, 564, 578
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TseI	GCWGC	2 cut(s)	343, 587
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	285
XspI	CTAG	3 cut(s)	225, 446, 595
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.