Rmu_sc0023132.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023132.1
OG0005464
Physical Location & Seq
Forward (+)
312 .. 1951
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023132.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
atggcaacgacgaggctctgggttggtggatgggttgtcggctccgggtgtagtcggatcgatctcgatctgctaccccagttcatggaggttttgcggcggtggtgtagcgacggatcttggagctccggcggtgctctctttcgccaccatccctgcgtgttggggcggggttgcggcgaagggtttcagcgtgatgctgttttgacgcgtgttatggcctggtggcgttggcattgctggcggtcggtggatctgctggttgtgcttggcccatttttggacgctgatccagaggcggaggcagaggattcatggcttttccgagagctgatccatcggaaagcgatggtgctgttcacgccatcgtttcttcgacttcgattccgacgatccaaccatttcgccggtttcctcacagctgcaaccgagggcctgcaaccagcgacaagtctgcaaccgacgacgggcctgcaacaagggcctgatttgacattcagacatcttcatgttgcggcttcgatcgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.91

Weight (kDa)

7.75

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 85
AccII CGCG 1 cut(s) 211
AciI CCGC 8 cut(s) 97, 100, 132, 169, 177, 244, 299, 515
AclWI GGATC 6 cut(s) 65, 124, 261, 284, 328, 387
AfiI CCNNNNNNNGG 3 cut(s) 85, 280, 467
AflIII ACRYGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 3 cut(s) 126, 331, 422
AluI AGCT 3 cut(s) 126, 331, 422
Alw21I GWGCWC 2 cut(s) 128, 139
AlwI GGATC 6 cut(s) 65, 124, 261, 284, 328, 387
AoxI GGCC 5 cut(s) 219, 271, 433, 469, 482
ApeKI GCWGC 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 4 cut(s) 272, 433, 469, 482
AsuC2I CCSGG 1 cut(s) 46
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 128, 139
BbvI GCAGC 1 cut(s) 409
BccI CCATC 5 cut(s) 24, 159, 343, 345, 373
BcgI CGANNNNNNTGC 4 cut(s) 436, 454, 470, 488
BciT130I CCWGG 1 cut(s) 223
BcnI CCSGG 1 cut(s) 46
BisI GCNGC 4 cut(s) 98, 178, 423, 516
BlsI GCNGC 4 cut(s) 99, 179, 424, 517
Bme1390I CCNGG 2 cut(s) 46, 223
BmgT120I GGNCC 4 cut(s) 272, 433, 469, 482
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 46, 223
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 46
Bsa29I ATCGAT 2 cut(s) 60, 525
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 429
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 280, 467
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 223
BseCI ATCGAT 2 cut(s) 60, 525
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 35, 151
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 85, 280, 467
BseMI GCAATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 409
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 2 cut(s) 248, 525
BshFI GGCC 5 cut(s) 221, 273, 435, 471, 484
BshVI ATCGAT 2 cut(s) 60, 525
BsiEI CGRYCG 2 cut(s) 248, 525
BsiHKAI GWGCWC 2 cut(s) 128, 139
BsiSI CCGG 3 cut(s) 45, 129, 408
BslI CCNNNNNNNGG 3 cut(s) 85, 280, 467
BsnI GGCC 5 cut(s) 221, 273, 435, 471, 484
Bsp1286I GDGCHC 2 cut(s) 128, 139
Bsp143I GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
BspACI CCGC 8 cut(s) 97, 100, 132, 169, 177, 244, 299, 515
BspANI GGCC 5 cut(s) 221, 273, 435, 471, 484
BspDI ATCGAT 2 cut(s) 60, 525
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 43
BspPI GGATC 6 cut(s) 65, 124, 261, 284, 328, 387
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
Bst2UI CCWGG 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 242, 437, 473
BstF5I GGATG 2 cut(s) 35, 151
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 9 cut(s) 60, 64, 70, 119, 256, 292, 336, 395, 525
BstMBI GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
BstMCI CGRYCG 2 cut(s) 248, 525
BstMWI GCNNNNNNNGC 4 cut(s) 241, 265, 361, 481
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 44, 221
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 116, 253
BstYI RGATCY 2 cut(s) 116, 253
Bsu15I ATCGAT 2 cut(s) 60, 525
BsuRI GGCC 5 cut(s) 221, 273, 435, 471, 484
BsuTUI ATCGAT 2 cut(s) 60, 525
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 35, 151
Cac8I GCNNGC 3 cut(s) 242, 437, 473
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 4 cut(s) 272, 433, 469, 482
ClaI ATCGAT 2 cut(s) 60, 525
CseI GACGC 2 cut(s) 217, 293
CviAII CATG 3 cut(s) 85, 315, 509
DpnI GATC 9 cut(s) 59, 63, 69, 118, 255, 291, 335, 394, 524
DpnII GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 433, 482
EcoRII CCWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 3 cut(s) 88, 318, 512
FaiI YATR 4 cut(s) 86, 218, 316, 510
FatI CATG 3 cut(s) 84, 314, 508
FauI CCCGC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 98, 178, 423, 516
FokI GGATG 2 cut(s) 42, 138
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 98, 178, 423, 516
GluI GCNGC 4 cut(s) 98, 178, 423, 516
HaeIII GGCC 5 cut(s) 221, 273, 435, 471, 484
HapII CCGG 3 cut(s) 45, 129, 408
HgaI GACGC 2 cut(s) 217, 293
Hin1II CATG 3 cut(s) 88, 318, 512
HinfI GANTC 2 cut(s) 311, 384
HpaII CCGG 3 cut(s) 45, 129, 408
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 5 cut(s) 57, 326, 342, 389, 500
Hpy188III TCNNGA 2 cut(s) 65, 293
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 5 cut(s) 13, 116, 393, 466, 469
HpyAV CCTTC 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 425, 439, 457, 475
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 265, 361, 481
Hsp92II CATG 3 cut(s) 88, 318, 512
Kzo9I GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
LmnI GCTCC 3 cut(s) 47, 123, 131
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 187
MalI GATC 9 cut(s) 59, 63, 69, 118, 255, 291, 335, 394, 524
MboI GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
MboII GAAGA 2 cut(s) 365, 497
MflI RGATCY 2 cut(s) 116, 253
MhlI GDGCHC 2 cut(s) 128, 139
MluI ACGCGT 1 cut(s) 209
MmeI TCCRAC 3 cut(s) 35, 412, 420
MnlI CCTC 7 cut(s) 6, 82, 289, 295, 301, 424, 425
MroXI GAANNNNTTC 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 3 cut(s) 45, 129, 408
MspR9I CCNGG 2 cut(s) 46, 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 241, 265, 361, 481
NciI CCSGG 1 cut(s) 46
NdeII GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
NlaIII CATG 3 cut(s) 88, 318, 512
NlaIV GGNNCC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 311, 384
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 4 cut(s) 99, 179, 424, 517
Ple19I CGATCG 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 4 cut(s) 272, 433, 469, 482
PsuI RGATCY 2 cut(s) 116, 253
PvuI CGATCG 1 cut(s) 525
PvuII CAGCTG 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 128
SatI GCNGC 4 cut(s) 98, 178, 423, 516
Sau3AI GATC 9 cut(s) 57, 61, 67, 116, 253, 289, 333, 392, 522
Sau96I GGNCC 4 cut(s) 272, 433, 469, 482
ScrFI CCNGG 2 cut(s) 46, 223
SduI GDGCHC 2 cut(s) 128, 139
SetI ASST 4 cut(s) 93, 128, 333, 424
SfaNI GCATC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 507
SsiI CCGC 8 cut(s) 97, 100, 132, 169, 177, 244, 299, 515
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 44, 221
TaqI TCGA 6 cut(s) 60, 66, 376, 382, 521, 525
TauI GCSGC 3 cut(s) 100, 180, 518
TfiI GAWTC 2 cut(s) 311, 384
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 73, 303, 497
TspGWI ACGGA 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.