Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004608.1

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Reverse (-)

2358 .. 2805

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004608.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggcagtggcgaggctctgggttggtggatgggttgtcggctacgggtgtagtcggatcgatctcaatctgctaccccggttcatggaggttttgcggcggtggtgtagcgaccgatcttggggctcgggcgatgctctctttcgccaccatccctgcatgttgggctatggctgtcctgatctagatgtgatgatgctgatcccggaagggacttggcagggctgcggcgaagggtttcagcgtgatgctgttttgacgcgtgacgatggtctgatggcgttggcgttgctggtggtcggtggatctgctggttgtgcttggccgtggctgggagtggtggtctttgggctgagcctgattcttgagcctctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.71

Weight (kDa)

5.15

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	97, 100, 228
AclWI	GGATC	3 cut(s)	65, 196, 313
AcoI	YGGCCR	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	85, 121, 332
AflIII	ACRYGT	1 cut(s)	260
AlwI	GGATC	3 cut(s)	65, 196, 313
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	79, 206
AvaI	CYCGRG	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	24, 159, 263, 271
BceAI	ACGGC	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	79, 206
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	3 cut(s)	98, 226, 229
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	3 cut(s)	99, 227, 230
Bme1390I	CCNGG	2 cut(s)	79, 206
BmeT110I	CYCGRG	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	79, 206
BmsI	GCATC	3 cut(s)	124, 186, 238
BoxI	GACNNNNGTC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuMI	CCSGG	2 cut(s)	79, 206
Bsa29I	ATCGAT	1 cut(s)	60
BsaBI	GATNNNNATC	2 cut(s)	66, 200
BsaJI	CCNNGG	2 cut(s)	77, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 121, 332
Bse8I	GATNNNNATC	2 cut(s)	66, 200
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	77, 326
BseGI	GGATG	2 cut(s)	35, 151
BseJI	GATNNNNATC	2 cut(s)	66, 200
BseLI	CCNNNNNNNGG	3 cut(s)	85, 121, 332
BseMII	CTCAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	79, 206
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	85, 121, 332
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
Bsp1720I	GCTNAGC	1 cut(s)	353
BspACI	CCGC	3 cut(s)	97, 100, 228
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	345
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	262
BspPI	GGATC	3 cut(s)	65, 196, 313
BssECI	CCNNGG	2 cut(s)	77, 326
BssMI	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	35, 151
BstFNI	CGCG	1 cut(s)	262
BstKTI	GATC	6 cut(s)	60, 64, 119, 184, 204, 308
BstMBI	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 317
BstNSI	RCATGY	1 cut(s)	163
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	77, 204
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	325
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	326
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	35, 151
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	268
CviAII	CATG	2 cut(s)	85, 160
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	6 cut(s)	59, 63, 118, 183, 203, 307
DpnII	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
EaeI	YGGCCR	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	2 cut(s)	88, 163
FaiI	YATR	3 cut(s)	86, 161, 171
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	84, 159
Fnu4HI	GCNGC	3 cut(s)	98, 226, 229
FokI	GGATG	2 cut(s)	42, 138
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	98, 226, 229
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	3 cut(s)	98, 226, 229
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	79, 206
HgaI	GACGC	1 cut(s)	268
Hin1II	CATG	2 cut(s)	88, 163
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	2 cut(s)	79, 206
Hpy188I	TCNGA	3 cut(s)	57, 276, 377
Hpy188III	TCNNGA	3 cut(s)	179, 185, 365
HpyAV	CCTTC	2 cut(s)	203, 227
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 317
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	88, 163
Kzo9I	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	3 cut(s)	124, 186, 238
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	6 cut(s)	59, 63, 118, 183, 203, 307
MboI	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	128
MluI	ACGCGT	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	6, 82
MroXI	GAANNNNTTC	1 cut(s)	237
MspI	CCGG	2 cut(s)	79, 206
MspR9I	CCNGG	2 cut(s)	79, 206
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	165, 317
NciI	CCSGG	2 cut(s)	79, 206
NdeII	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
NlaIII	CATG	2 cut(s)	88, 163
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	99, 227, 230
PshAI	GACNNNNGTC	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	305
SatI	GCNGC	3 cut(s)	98, 226, 229
Sau3AI	GATC	6 cut(s)	57, 61, 116, 181, 201, 305
ScrFI	CCNGG	2 cut(s)	79, 206
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	1 cut(s)	93
SfaNI	GCATC	3 cut(s)	124, 186, 238
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SsiI	CCGC	3 cut(s)	97, 100, 228
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	77, 204
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	129
TauI	GCSGC	2 cut(s)	100, 231
TfiI	GAWTC	1 cut(s)	361
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	12
XbaI	TCTAGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.