Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

53257053 .. 53257490

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGATGTTTTGCGGCGTTGGTGCAGCGGCGGATCTTGGGGTCCTGGCGTTGATCTCTTTCGCCATCGTCCCTGTATGGTGGTTTGTGGCTGCTCGGGTCTAGATGCGGCGGTGCCGATCCCGGAAGGGCTCTATCCGATCTCGTTTTTGGATCTGTGGGGTTGTGATCCATATGCTGGGGTGGTTTTTGTGGTGTGTCAGGACGGGGCTGCGGCGAAGGGGTTCGGCGTGGTGCTGTTTTTGATGTGCGGCGATTACCTGGTGGCGTTGGCGGTTGATGGCGGTCGTCGGATCTACAGGTTGTACTCGGCCGTGGTTGGGAGAGGCGGTCTTTGGGCTGGGCCTGTTTTCTTGGGTCGTTTTGTTGTTTTGTATCATACTGTTTTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.98

Weight (kDa)

7.56

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	176
AclWI	GGATC	5 cut(s)	40, 112, 159, 161, 299
AcoI	YGGCCR	1 cut(s)	309
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	176, 318
AjnI	CCWGG	2 cut(s)	43, 258
AlwI	GGATC	5 cut(s)	40, 112, 159, 161, 299
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	2 cut(s)	309, 341
ApeKI	GCWGC	3 cut(s)	24, 90, 209
Asp700I	GAANNNNTTC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	41, 341
AsuC2I	CCSGG	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	36, 77, 196
BccI	CCATC	2 cut(s)	72, 272
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	45, 260
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	295
BisI	GCNGC	8 cut(s)	14, 25, 28, 91, 108, 210, 213, 250
BlsI	GCNGC	8 cut(s)	15, 26, 29, 92, 109, 211, 214, 251
Bme1390I	CCNGG	3 cut(s)	45, 122, 260
Bme18I	GGWCC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	41, 341
BmiI	GGNNCC	2 cut(s)	42, 114
BmrFI	CCNGG	3 cut(s)	45, 122, 260
BmsI	GCATC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 318
BseBI	CCWGG	2 cut(s)	45, 260
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	176, 318
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	36, 77, 196
BseYI	CCCAGC	2 cut(s)	176, 338
BsgI	GTGCAG	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	286, 312
BshFI	GGCC	2 cut(s)	311, 343
BshNI	GGYRCC	1 cut(s)	112
BsiEI	CGRYCG	2 cut(s)	286, 312
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	176, 318
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	311, 343
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
BspANI	GGCC	2 cut(s)	311, 343
BspLI	GGNNCC	2 cut(s)	42, 114
BspPI	GGATC	5 cut(s)	40, 112, 159, 161, 299
BspT107I	GGYRCC	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
Bst2UI	CCWGG	2 cut(s)	45, 260
Bst4CI	ACNGT	1 cut(s)	382
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	7 cut(s)	35, 55, 120, 141, 154, 169, 294
BstMBI	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
BstMCI	CGRYCG	2 cut(s)	286, 312
BstNI	CCWGG	2 cut(s)	45, 260
BstSCI	CCNGG	3 cut(s)	43, 120, 258
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	36, 77, 196
BstX2I	RGATCY	3 cut(s)	32, 151, 291
BstYI	RGATCY	3 cut(s)	32, 151, 291
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	311, 343
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	41, 341
CsiI	ACCWGGT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	304
CviJI	RGCY	6 cut(s)	90, 130, 209, 311, 338, 343
CviKI_1	RGCY	6 cut(s)	90, 130, 209, 311, 338, 343
CviQI	GTAC	1 cut(s)	304
DpnI	GATC	7 cut(s)	34, 54, 119, 140, 153, 168, 293
DpnII	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	41
Eco52I	CGGCCG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	43, 258
EcoT38I	GRGCYC	1 cut(s)	132
FaiI	YATR	4 cut(s)	77, 172, 174, 378
FaqI	GGGAC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	8 cut(s)	14, 25, 28, 91, 108, 210, 213, 250
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	8 cut(s)	14, 25, 28, 91, 108, 210, 213, 250
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	8 cut(s)	14, 25, 28, 91, 108, 210, 213, 250
GsaI	CCCAGC	2 cut(s)	180, 342
HaeIII	GGCC	2 cut(s)	311, 343
HapII	CCGG	1 cut(s)	122
HpaII	CCGG	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	138, 291, 392
Hpy188III	TCNNGA	2 cut(s)	101, 200
Hpy99I	CGWCG	1 cut(s)	291
HpyAV	CCTTC	2 cut(s)	119, 211
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
Lsp1109I	GCAGC	3 cut(s)	36, 77, 196
LweI	GCATC	1 cut(s)	94
MabI	ACCWGGT	1 cut(s)	258
MaeI	CTAG	1 cut(s)	101
MalI	GATC	7 cut(s)	34, 54, 119, 140, 153, 168, 293
MboI	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
MflI	RGATCY	3 cut(s)	32, 151, 291
MhlI	GDGCHC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	3 cut(s)	45, 122, 260
MvaI	CCWGG	2 cut(s)	45, 260
NciI	CCSGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
NlaIV	GGNNCC	2 cut(s)	42, 114
NmeAIII	GCCGAG	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	8 cut(s)	15, 26, 29, 92, 109, 211, 214, 251
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	43, 258
PspFI	CCCAGC	2 cut(s)	176, 338
PspGI	CCWGG	2 cut(s)	43, 258
PspN4I	GGNNCC	2 cut(s)	42, 114
PspPI	GGNCC	2 cut(s)	41, 341
PspPPI	RGGWCCY	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	32, 151, 291
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SatI	GCNGC	8 cut(s)	14, 25, 28, 91, 108, 210, 213, 250
Sau3AI	GATC	7 cut(s)	32, 52, 117, 138, 151, 166, 291
Sau96I	GGNCC	2 cut(s)	41, 341
ScrFI	CCNGG	3 cut(s)	45, 122, 260
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	2 cut(s)	261, 302
SexAI	ACCWGGT	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	3 cut(s)	43, 120, 258
TaaI	ACNGT	1 cut(s)	382
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	5 cut(s)	16, 30, 110, 215, 252
TseI	GCWGC	3 cut(s)	24, 90, 209
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	41
XbaI	TCTAGA	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.