Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

10199567 .. 10205001

Gene Structure 5435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGCTGCGATTAATCCAGGTAACAGGAACAATCCCGAAACGGCTCCGGCGGTTCAATCGCCGCGTCAGGGCGGTGGTGGTGGTGATAGTGTGAGCAGTCCGCAGTCGCGTCGGGCGGCCAAGGCGGCGGCGGCGGTGGCGCCTTGGACGCAAATTGTGCGAGGGGAATCTGAGCCGCCGATCATGGCCGCTCCTTCCTCGCCATCATCATCATCGACCGCTGCTGTGACTGAGCAACAACCTGTAGCAGCGGCTTCTTTTTCGTCGGCCTCGCCTTCTCAGTCTAATTCGCCGTCGCCGACTCCGGCGGAGGATTCAGTGGGTGAGGGCTCGGAGAACAGTAGTGGGCCCAACGGCAATGCGGGTAAGAAGCCCGCTTGGAACAAGCCGTCCAATGGAGCCATTGAGGTTGGGCCGGTAATGGGAGCTGTTTCTTGGCCTGCTTTGTCCGACGCTCGGGCTTCGACTAAATCGTCTTCTGAATCTTTGAAAGGTGTATCTGATGCGCCTTTGTCCGTCTCTGTCACGCAGGGGGCTGGAACTACAACTATCTCATCACCGAAACAAGTGAATTCTTCTTCGACTCCAACCCATAGTGGACCTACTCGCCAGAGATCGATGAAACAAAGAAATAATGCAAGTGCATCCTCTAATGGTGGCATCCCCCAGCATCAAATGCCAGCTGGCCAAGGTGTTGAAGTGACTCCAAATAACCCTTCACCTAAGGATCATAGCCATAGGAGTGCATTTGGGTCACAAACTCACAGCAGCAACGATCATCCACAGCAACGTAATTCCTTCAGGAACCGAAATGGTGGTCCACATCCCCGTGGAGATGGTTCTCACCATCACAACTATGGCAGCAGGCATCAGGACCGTGGAAGTCAAGATTGGAACAATCATCGAAATTTTAACAGTAGAGACAATCACATGCATCCTCAGAGAGTTGTTCCTAGGGCAATGAGGCCATCTCACCAAGCACCGGCACCACCAAATGCTCCCGCGTTTATCCCCCAGCCTATGAGGTCTTTCGGTCCCATAGGGTTTGACTTGCAAGGACCACTGGTATACTTTCAACAGGATCCACTAGTACCTTTTATGGCACCACCACGGCATCCCCTGATATTTGCAGGTCCAGATCTTCAGCTGCATAATAAGATTACTAATCAGATAGATTATTATTTCAGTAATGAAAATTTAATTAAAGATACTTTCTTGCGGCGAAACATGGATGATCAGGGATGGGTTCGTGTTAAATTAATAGCAGGCTTCAACAAAGTTATGAATTTGACAGACAATATCCAGATTATACTGGATGCTTTGAGAATGTCAACTGTGGTGGAAGTACAGGGTGATAAAATAAGGAGGCGCAATGATTGGATGAGATGGGTGATGCCAGCTGCTCAGCCTCCTGCTGTGTCAAGCTCTCAGACCCTTGGAAAATCTGGAAATGATATGCTATCAGCTCATATCCAAAGTATTTCACTTGATGAGAAGACTACTAACAACAAGAATATTCAGAACAATACCCAGCCGCAGCCGTCCTCTGGTGATGGAGCAGGTCAATTCAGTGTTCAAGGAGGTGCAGATCGCACTATTTCAGCAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

537

Amino Acids

57.27

Weight (kDa)

10.01

Isoelectric Point (pI)

67.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	387 - 442	1.3e-21	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	472
Acc36I	ACCTGC	2 cut(s)	1121, 1550
AccB1I	GGYRCC	3 cut(s)	139, 985, 1102
AccBSI	CCGCTC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	1068
AccII	CGCG	3 cut(s)	64, 109, 1004
AclWI	GGATC	3 cut(s)	735, 1076, 1089
AcoI	YGGCCR	3 cut(s)	117, 186, 685
AcsI	RAATTY	4 cut(s)	571, 907, 1195, 1285
AcuI	CTGAAG	2 cut(s)	784, 1127
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	1092, 1347
AfiI	CCNNNNNNNGG	6 cut(s)	68, 395, 422, 456, 982, 1547
AgsI	TTSAA	6 cut(s)	56, 490, 698, 1076, 1273, 1577
AhlI	ACTAGT	1 cut(s)	1087
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	4 cut(s)	700, 732, 874, 906
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	428, 683, 1147, 1400, 1425, 1466
AluI	AGCT	6 cut(s)	428, 683, 1147, 1400, 1425, 1466
Alw26I	GTCTC	2 cut(s)	523, 915
AlwI	GGATC	3 cut(s)	735, 1076, 1089
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	8 cut(s)	117, 186, 267, 347, 413, 437, 685, 965
ApaI	GGGCCC	1 cut(s)	351
ApeKI	GCWGC	8 cut(s)	5, 221, 248, 768, 861, 1147, 1400, 1537
ApoI	RAATTY	4 cut(s)	571, 907, 1195, 1285
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
AseI	ATTAAT	2 cut(s)	12, 1259
AspA2I	CCTAGG	1 cut(s)	953
AspLEI	GCGC	3 cut(s)	142, 508, 1371
AspS9I	GGNCC	9 cut(s)	347, 348, 413, 599, 818, 874, 1034, 1058, 1133
AsuHPI	GGTGA	9 cut(s)	95, 335, 549, 711, 836, 965, 1364, 1402, 1562
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	6 cut(s)	599, 818, 874, 1034, 1058, 1133
AvrII	CCTAGG	1 cut(s)	953
AxyI	CCTNAGG	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	1081
BanI	GGYRCC	3 cut(s)	139, 985, 1102
BanII	GRGCYC	2 cut(s)	332, 351
BbsI	GAAGAC	2 cut(s)	468, 1502
BbvI	GCAGC	7 cut(s)	208, 260, 780, 873, 1134, 1387, 1549
BccI	CCATC	7 cut(s)	211, 830, 855, 976, 1236, 1380, 1547
BceAI	ACGGC	6 cut(s)	57, 277, 370, 373, 1127, 1525
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	18
BclI	TGATCA	1 cut(s)	1234
BcoDI	GTCTC	2 cut(s)	523, 915
BcuI	ACTAGT	1 cut(s)	1087
BfaI	CTAG	2 cut(s)	954, 1088
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	1121, 1550
BglI	GCCNNNNNGGC	1 cut(s)	125
BglII	AGATCT	1 cut(s)	1138
BlnI	CCTAGG	1 cut(s)	953
BlpI	GCTNAGC	1 cut(s)	1404
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	6 cut(s)	599, 818, 874, 1034, 1058, 1133
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	9 cut(s)	347, 348, 413, 599, 818, 874, 1034, 1058, 1133
BmiI	GGNNCC	9 cut(s)	45, 141, 349, 400, 806, 987, 1036, 1083, 1104
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	9 cut(s)	493, 653, 669, 679, 877, 943, 1123, 1306, 1383
BpiI	GAAGAC	2 cut(s)	468, 1502
BplI	GAGNNNNNCTC	2 cut(s)	955, 987
Bpu1102I	GCTNAGC	1 cut(s)	1404
Bsa29I	ATCGAT	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	8 cut(s)	120, 143, 688, 829, 877, 953, 1109, 1435
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 395, 422, 456, 982, 1547
Bse118I	RCCGGY	2 cut(s)	415, 982
Bse1I	ACTGG	2 cut(s)	1068, 1317
Bse21I	CCTNAGG	1 cut(s)	723
Bse3DI	GCAATG	3 cut(s)	364, 966, 1378
BseBI	CCWGG	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	617
BseDI	CCNNGG	8 cut(s)	120, 143, 688, 829, 877, 953, 1109, 1435
BseLI	CCNNNNNNNGG	6 cut(s)	68, 395, 422, 456, 982, 1547
BseMI	GCAATG	3 cut(s)	364, 966, 1378
BseMII	CTCAG	6 cut(s)	162, 222, 293, 953, 1418, 1442
BseNI	ACTGG	2 cut(s)	1068, 1317
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	7 cut(s)	208, 260, 780, 873, 1134, 1387, 1549
BseYI	CCCAGC	3 cut(s)	666, 1014, 1530
BsgI	GTGCAG	1 cut(s)	1605
Bsh1236I	CGCG	3 cut(s)	64, 109, 1004
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	8 cut(s)	119, 188, 269, 349, 415, 439, 687, 967
BshNI	GGYRCC	3 cut(s)	139, 985, 1102
BshVI	ATCGAT	1 cut(s)	617
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	456
BsiSI	CCGG	4 cut(s)	47, 305, 416, 983
BslFI	GGGAC	1 cut(s)	1020
BslI	CCNNNNNNNGG	6 cut(s)	68, 395, 422, 456, 982, 1547
BsmAI	GTCTC	2 cut(s)	523, 915
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	1020
BsnI	GGCC	8 cut(s)	119, 188, 269, 349, 415, 439, 687, 967
BsoBI	CYCGRG	1 cut(s)	456
Bsp120I	GGGCCC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	332, 351
Bsp143I	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
Bsp1720I	GCTNAGC	1 cut(s)	1404
BspANI	GGCC	8 cut(s)	119, 188, 269, 349, 415, 439, 687, 967
BspCNI	CTCAG	6 cut(s)	163, 223, 292, 952, 1417, 1441
BspDI	ATCGAT	1 cut(s)	617
BspFNI	CGCG	3 cut(s)	64, 109, 1004
BspLI	GGNNCC	9 cut(s)	45, 141, 349, 400, 806, 987, 1036, 1083, 1104
BspMI	ACCTGC	2 cut(s)	1121, 1550
BspPI	GGATC	3 cut(s)	735, 1076, 1089
BspT107I	GGYRCC	3 cut(s)	139, 985, 1102
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	3 cut(s)	364, 966, 1378
BsrFI	RCCGGY	2 cut(s)	415, 982
BsrI	ACTGG	2 cut(s)	1068, 1317
BssAI	RCCGGY	2 cut(s)	415, 982
BssECI	CCNNGG	8 cut(s)	120, 143, 688, 829, 877, 953, 1109, 1435
BssMI	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
BssNAI	GTATAC	1 cut(s)	1069
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	5 cut(s)	120, 143, 688, 953, 1435
Bst1107I	GTATAC	1 cut(s)	1069
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	4 cut(s)	341, 878, 917, 1336
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	2 cut(s)	157, 676
BstC8I	GCNNGC	7 cut(s)	375, 441, 681, 685, 866, 1267, 1398
BstDEI	CTNAG	7 cut(s)	171, 231, 279, 723, 939, 1404, 1428
BstDSI	CCRYGG	3 cut(s)	829, 877, 1109
BstFNI	CGCG	3 cut(s)	64, 109, 1004
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	142, 508, 1371
BstKTI	GATC	8 cut(s)	183, 617, 730, 778, 1084, 1141, 1237, 1591
BstMAI	GTCTC	2 cut(s)	523, 915
BstMBI	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 125, 131, 137, 148, 157, 676
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	934
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	3 cut(s)	64, 109, 1004
BstV1I	GCAGC	7 cut(s)	208, 260, 780, 873, 1134, 1387, 1549
BstV2I	GAAGAC	2 cut(s)	468, 1502
BstX2I	RGATCY	2 cut(s)	1081, 1138
BstYI	RGATCY	2 cut(s)	1081, 1138
BstZ17I	GTATAC	1 cut(s)	1069
Bsu15I	ATCGAT	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	723
BsuRI	GGCC	8 cut(s)	119, 188, 269, 349, 415, 439, 687, 967
BsuTUI	ATCGAT	1 cut(s)	617
BtgI	CCRYGG	3 cut(s)	829, 877, 1109
BtsIMutI	CAGTG	3 cut(s)	324, 1061, 1576
BveI	ACCTGC	2 cut(s)	1121, 1550
Cac8I	GCNNGC	7 cut(s)	375, 441, 681, 685, 866, 1267, 1398
CfoI	GCGC	3 cut(s)	142, 508, 1371
Cfr10I	RCCGGY	2 cut(s)	415, 982
Cfr13I	GGNCC	9 cut(s)	347, 348, 413, 599, 818, 874, 1034, 1058, 1133
ClaI	ATCGAT	1 cut(s)	617
CseI	GACGC	4 cut(s)	53, 98, 157, 461
Csp6I	GTAC	2 cut(s)	1091, 1346
CspCI	CAANNNNNGTGG	2 cut(s)	1320, 1355
CviAII	CATG	3 cut(s)	184, 931, 1228
CviQI	GTAC	2 cut(s)	1091, 1346
DdeI	CTNAG	7 cut(s)	171, 231, 279, 723, 939, 1404, 1428
DinI	GGCGCC	1 cut(s)	141
DpnI	GATC	8 cut(s)	182, 616, 729, 777, 1083, 1140, 1236, 1590
DpnII	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
DrdI	GACNNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	3 cut(s)	117, 186, 685
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	5 cut(s)	120, 143, 688, 953, 1435
Eco24I	GRGCYC	2 cut(s)	332, 351
Eco47I	GGWCC	6 cut(s)	599, 818, 874, 1034, 1058, 1133
Eco57I	CTGAAG	2 cut(s)	784, 1127
Eco81I	CCTNAGG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	5 cut(s)	120, 143, 688, 953, 1435
EcoT22I	ATGCAT	1 cut(s)	936
EcoT38I	GRGCYC	2 cut(s)	332, 351
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
ErhI	CCWWGG	5 cut(s)	120, 143, 688, 953, 1435
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	3 cut(s)	187, 934, 1231
FaqI	GGGAC	1 cut(s)	1020
FatI	CATG	3 cut(s)	183, 930, 1227
FauI	CCCGC	3 cut(s)	355, 382, 1009
FbaI	TGATCA	1 cut(s)	1234
FblI	GTMKAC	1 cut(s)	1068
FriOI	GRGCYC	2 cut(s)	332, 351
FspBI	CTAG	2 cut(s)	954, 1088
GlaI	GCGC	3 cut(s)	141, 507, 1370
GsaI	CCCAGC	3 cut(s)	670, 1018, 1534
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	8 cut(s)	119, 188, 269, 349, 415, 439, 687, 967
HapII	CCGG	4 cut(s)	47, 305, 416, 983
HgaI	GACGC	4 cut(s)	53, 98, 157, 461
HhaI	GCGC	3 cut(s)	142, 508, 1371
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	187, 934, 1231
Hin6I	GCGC	3 cut(s)	140, 506, 1369
HinP1I	GCGC	3 cut(s)	140, 506, 1369
HincII	GTYRAC	1 cut(s)	1332
HindII	GTYRAC	1 cut(s)	1332
HinfI	GANTC	6 cut(s)	167, 301, 314, 482, 583, 703
HpaII	CCGG	4 cut(s)	47, 305, 416, 983
HphI	GGTGA	9 cut(s)	95, 335, 549, 711, 836, 965, 1364, 1402, 1562
Hpy166II	GTNNAC	4 cut(s)	599, 821, 1069, 1332
Hpy188I	TCNGA	9 cut(s)	172, 334, 451, 481, 502, 942, 1170, 1431, 1521
Hpy188III	TCNNGA	7 cut(s)	35, 802, 872, 887, 1136, 1303, 1446
Hpy8I	GTNNAC	4 cut(s)	599, 821, 1069, 1332
Hpy99I	CGWCG	4 cut(s)	114, 268, 298, 455
HpyAV	CCTTC	4 cut(s)	204, 285, 726, 808
HpyCH4III	ACNGT	4 cut(s)	341, 878, 917, 1336
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	8 cut(s)	638, 644, 746, 934, 1054, 1130, 1150, 1586
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 125, 131, 137, 148, 157, 676
HpyF3I	CTNAG	7 cut(s)	171, 231, 279, 723, 939, 1404, 1428
HpySE526I	ACGT	1 cut(s)	790
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	187, 934, 1231
HspAI	GCGC	3 cut(s)	140, 506, 1369
KasI	GGCGCC	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	1234
Kzo9I	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
LmnI	GCTCC	6 cut(s)	49, 196, 398, 425, 1003, 1556
Lsp1109I	GCAGC	7 cut(s)	208, 260, 780, 873, 1134, 1387, 1549
LweI	GCATC	9 cut(s)	493, 653, 669, 679, 877, 943, 1123, 1306, 1383
MaeI	CTAG	2 cut(s)	954, 1088
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	5 cut(s)	20, 226, 523, 700, 753
MalI	GATC	8 cut(s)	182, 616, 729, 777, 1083, 1140, 1236, 1590
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
MboII	GAAGA	5 cut(s)	468, 567, 570, 1133, 1507
MflI	RGATCY	2 cut(s)	1081, 1138
MhlI	GDGCHC	2 cut(s)	332, 351
MlsI	TGGCCA	1 cut(s)	687
MluNI	TGGCCA	1 cut(s)	687
Mly113I	GGCGCC	1 cut(s)	140
MlyI	GAGTC	3 cut(s)	295, 577, 697
MmeI	TCCRAC	2 cut(s)	474, 611
Mox20I	TGGCCA	1 cut(s)	687
Mph1103I	ATGCAT	1 cut(s)	936
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	6 cut(s)	12, 912, 1199, 1203, 1254, 1259
MslI	CAYNNNNRTG	3 cut(s)	741, 828, 855
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	5 cut(s)	221, 251, 683, 1147, 1400
MspI	CCGG	4 cut(s)	47, 305, 416, 983
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	3 cut(s)	64, 109, 1004
MwoI	GCNNNNNNNGC	7 cut(s)	122, 125, 131, 137, 148, 157, 676
NarI	GGCGCC	1 cut(s)	140
NdeII	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
NlaIII	CATG	3 cut(s)	187, 934, 1231
NlaIV	GGNNCC	9 cut(s)	45, 141, 349, 400, 806, 987, 1036, 1083, 1104
NmuCI	GTSAC	4 cut(s)	226, 523, 700, 753
NsiI	ATGCAT	1 cut(s)	936
NspI	RCATGY	1 cut(s)	934
PacI	TTAATTAA	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	2 cut(s)	296, 470
PfeI	GAWTC	3 cut(s)	167, 314, 482
PleI	GAGTC	3 cut(s)	295, 577, 697
PluTI	GGCGCC	1 cut(s)	143
PpsI	GAGTC	3 cut(s)	295, 577, 697
PshBI	ATTAAT	2 cut(s)	12, 1259
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	3 cut(s)	666, 1014, 1530
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	9 cut(s)	45, 141, 349, 400, 806, 987, 1036, 1083, 1104
PspOMI	GGGCCC	1 cut(s)	347
PspPI	GGNCC	9 cut(s)	347, 348, 413, 599, 818, 874, 1034, 1058, 1133
PsuI	RGATCY	2 cut(s)	1081, 1138
PvuII	CAGCTG	3 cut(s)	683, 1147, 1400
RsaI	GTAC	2 cut(s)	1092, 1347
RsaNI	GTAC	2 cut(s)	1091, 1346
RseI	CAYNNNNRTG	3 cut(s)	741, 828, 855
SaqAI	TTAA	6 cut(s)	12, 912, 1199, 1203, 1254, 1259
Sau3AI	GATC	8 cut(s)	180, 614, 727, 775, 1081, 1138, 1234, 1588
Sau96I	GGNCC	9 cut(s)	347, 348, 413, 599, 818, 874, 1034, 1058, 1133
SchI	GAGTC	3 cut(s)	295, 577, 697
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	332, 351
SfaNI	GCATC	9 cut(s)	493, 653, 669, 679, 877, 943, 1123, 1306, 1383
SfcI	CTRYAG	1 cut(s)	243
SfoI	GGCGCC	1 cut(s)	141
SinI	GGWCC	6 cut(s)	599, 818, 874, 1034, 1058, 1133
SmiMI	CAYNNNNRTG	3 cut(s)	741, 828, 855
SpeI	ACTAGT	1 cut(s)	1087
SspDI	GGCGCC	1 cut(s)	139
SspI	AATATT	1 cut(s)	1516
SspMI	CTAG	2 cut(s)	954, 1088
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	5 cut(s)	120, 143, 688, 953, 1435
TaaI	ACNGT	4 cut(s)	341, 878, 917, 1336
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	5 cut(s)	215, 464, 581, 617, 904
TaqII	GACCGA	1 cut(s)	1022
TatI	WGTACW	1 cut(s)	1345
TfiI	GAWTC	3 cut(s)	167, 314, 482
Tru1I	TTAA	6 cut(s)	12, 912, 1199, 1203, 1254, 1259
Tru9I	TTAA	6 cut(s)	12, 912, 1199, 1203, 1254, 1259
TscAI	CASTG	3 cut(s)	324, 1068, 1576
TseFI	GTSAC	4 cut(s)	226, 523, 700, 753
TseI	GCWGC	8 cut(s)	5, 221, 248, 768, 861, 1147, 1400, 1537
Tsp45I	GTSAC	4 cut(s)	226, 523, 700, 753
TspDTI	ATGAA	3 cut(s)	635, 1206, 1298
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	3 cut(s)	324, 1068, 1576
VpaK11BI	GGWCC	6 cut(s)	599, 818, 874, 1034, 1058, 1133
VspI	ATTAAT	2 cut(s)	12, 1259
XapI	RAATTY	4 cut(s)	571, 907, 1195, 1285
XceI	RCATGY	1 cut(s)	934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmaJI	CCTAGG	1 cut(s)	953
XmiI	GTMKAC	1 cut(s)	1068
XspI	CTAG	2 cut(s)	954, 1088
Zsp2I	ATGCAT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.