Rh4BG357900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005464
Physical Location & Seq
Forward (+)
51807988 .. 51809086
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG357900.1

Sequence Viewer

Length: 411 bp
ATGGATGTTTTCAGGCGTTGGTGCAGCGGCGGATCTTGGGGTCCCGGCGTTGATCTCTTACGCCACCGTCCCTGTATGGTGGTTTGTGGCTGCCCGGGTCTAGATGCGGCGGTGCCGATCCCGGAAGGGCTCTATCCGATCTCGTTTTTGGATCTGTGGGGTTGTGATCCACATGCTGGGGTGGTTTTTGTGGTGTGTCAGGGCGGGGCTGCGGCGAAGGGGTTCGGCGTGGTGCTGTTTTTGATGTGCGGCGATGACCTGGTGGCGTTGGCGGTTGATGGCGGTCGTCGGATCTGCAGGTTGTACTCGGCTGTGGCTGGGAGTGGCGGTCTTTGGGCTGGGCCTGGTTTCTTGGGCCGTTATGTTGTTTTGGTGCTGGTTTTTTTTGGTTGGTTGCTTTGGTGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.44

Weight (kDa)

6.67

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 176
AclWI GGATC 5 cut(s) 40, 112, 159, 161, 299
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 176
AjnI CCWGG 2 cut(s) 258, 343
AlwI GGATC 5 cut(s) 40, 112, 159, 161, 299
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 2 cut(s) 341, 355
ApeKI GCWGC 3 cut(s) 24, 90, 209
Asp700I GAANNNNTTC 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 41, 341, 355
AsuC2I CCSGG 4 cut(s) 45, 95, 96, 122
AvaI CYCGRG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 36, 77, 196
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 2 cut(s) 260, 345
BcnI CCSGG 4 cut(s) 45, 95, 96, 122
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 7 cut(s) 25, 28, 91, 108, 210, 213, 250
BlsI GCNGC 7 cut(s) 26, 29, 92, 109, 211, 214, 251
Bme1390I CCNGG 6 cut(s) 45, 95, 96, 122, 260, 345
Bme18I GGWCC 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 41, 341, 355
BmiI GGNNCC 3 cut(s) 42, 43, 114
BmrFI CCNGG 6 cut(s) 45, 95, 96, 122, 260, 345
BmsI GCATC 1 cut(s) 94
BpuMI CCSGG 4 cut(s) 45, 95, 96, 122
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseBI CCWGG 2 cut(s) 260, 345
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 36, 77, 196
BseYI CCCAGC 3 cut(s) 176, 317, 338
BsgI GTGCAG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 343, 357
BshNI GGYRCC 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 3 cut(s) 45, 95, 122
BslFI GGGAC 2 cut(s) 27, 54
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 27, 54
BsnI GGCC 2 cut(s) 343, 357
BsoBI CYCGRG 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
BspANI GGCC 2 cut(s) 343, 357
BspLI GGNNCC 3 cut(s) 42, 43, 114
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 5 cut(s) 40, 112, 159, 161, 299
BspT107I GGYRCC 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
Bst2UI CCWGG 2 cut(s) 260, 345
Bst4CI ACNGT 1 cut(s) 68
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 7 cut(s) 35, 55, 120, 141, 154, 169, 294
BstMBI GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
BstMCI CGRYCG 1 cut(s) 286
BstNI CCWGG 2 cut(s) 260, 345
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 6 cut(s) 43, 93, 94, 120, 258, 343
BstSFI CTRYAG 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 36, 77, 196
BstX2I RGATCY 3 cut(s) 32, 151, 291
BstYI RGATCY 3 cut(s) 32, 151, 291
BsuRI GGCC 2 cut(s) 343, 357
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 288
Cfr13I GGNCC 3 cut(s) 41, 341, 355
Cfr9I CCCGGG 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 173
CviJI RGCY 8 cut(s) 90, 130, 209, 311, 317, 338, 343, 357
CviKI_1 RGCY 8 cut(s) 90, 130, 209, 311, 317, 338, 343, 357
CviQI GTAC 1 cut(s) 304
DpnI GATC 7 cut(s) 34, 54, 119, 140, 153, 168, 293
DpnII GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 258, 343
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 1 cut(s) 176
FaiI YATR 3 cut(s) 77, 174, 363
FaqI GGGAC 2 cut(s) 27, 54
FatI CATG 1 cut(s) 172
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 7 cut(s) 25, 28, 91, 108, 210, 213, 250
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 7 cut(s) 25, 28, 91, 108, 210, 213, 250
FspBI CTAG 1 cut(s) 101
GluI GCNGC 7 cut(s) 25, 28, 91, 108, 210, 213, 250
GsaI CCCAGC 3 cut(s) 180, 321, 342
HaeIII GGCC 2 cut(s) 343, 357
HapII CCGG 3 cut(s) 45, 95, 122
Hin1II CATG 1 cut(s) 176
HpaII CCGG 3 cut(s) 45, 95, 122
Hpy188I TCNGA 2 cut(s) 138, 291
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 119, 211
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 24, 297
Hsp92II CATG 1 cut(s) 176
KflI GGGWCCC 1 cut(s) 41
Kzo9I GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
Lsp1109I GCAGC 3 cut(s) 36, 77, 196
LweI GCATC 1 cut(s) 94
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 1 cut(s) 101
MalI GATC 7 cut(s) 34, 54, 119, 140, 153, 168, 293
MboI GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
MflI RGATCY 3 cut(s) 32, 151, 291
MhlI GDGCHC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 3 cut(s) 45, 95, 122
MspR9I CCNGG 6 cut(s) 45, 95, 96, 122, 260, 345
MvaI CCWGG 2 cut(s) 260, 345
NciI CCSGG 4 cut(s) 45, 95, 96, 122
NdeII GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 3 cut(s) 42, 43, 114
NmeAIII GCCGAG 1 cut(s) 287
NspI RCATGY 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 7 cut(s) 26, 29, 92, 109, 211, 214, 251
PpuMI RGGWCCY 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 258, 343
PspFI CCCAGC 3 cut(s) 176, 317, 338
PspGI CCWGG 2 cut(s) 258, 343
PspN4I GGNNCC 3 cut(s) 42, 43, 114
PspPI GGNCC 3 cut(s) 41, 341, 355
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 3 cut(s) 32, 151, 291
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SatI GCNGC 7 cut(s) 25, 28, 91, 108, 210, 213, 250
Sau3AI GATC 7 cut(s) 32, 52, 117, 138, 151, 166, 291
Sau96I GGNCC 3 cut(s) 41, 341, 355
ScrFI CCNGG 6 cut(s) 45, 95, 96, 122, 260, 345
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 261, 302
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 295
SinI GGWCC 1 cut(s) 41
SmaI CCCGGG 1 cut(s) 96
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 6 cut(s) 43, 93, 94, 120, 258, 343
TaaI ACNGT 1 cut(s) 68
TatI WGTACW 1 cut(s) 303
TauI GCSGC 4 cut(s) 30, 110, 215, 252
TseI GCWGC 3 cut(s) 24, 90, 209
TspMI CCCGGG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 176
XmaI CCCGGG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.