Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002928.1

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

192861 .. 193290

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002928.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggcaacggcgaggctctgggttggtggatgggttgtcggctccgggtgtagtcggatcgatctcgatctgctaccccagttcatggaggttttgccgcggtggtgtagcgacggatcttggagttccggcggtgctctctttcgccaccatccctgcgtgttggggcggggctgcggcgaagggtttcagcgtgatgctgttttgacgcgtgttatggcctggtggcgttggcattgctggcggtcggtggatctgctggttgtgcttggccgtggctgggagtggtggtctttgggctcagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

8.42

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	2 cut(s)	100, 211
AciI	CCGC	6 cut(s)	98, 100, 132, 169, 177, 244
AclWI	GGATC	3 cut(s)	65, 124, 261
AcoI	YGGCCR	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	85, 280
AflIII	ACRYGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	65, 124, 261
AoxI	GGCC	2 cut(s)	219, 271
ApeKI	GCWGC	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	24, 159
BceAI	ACGGC	2 cut(s)	24, 258
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	46
BisI	GCNGC	3 cut(s)	98, 175, 178
BlpI	GCTNAGC	1 cut(s)	301
BlsI	GCNGC	3 cut(s)	99, 176, 179
Bme1390I	CCNGG	2 cut(s)	46, 223
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	46, 223
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	98, 274
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 280
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	98, 274
BseGI	GGATG	2 cut(s)	35, 151
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	85, 280
BseMI	GCAATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	279
Bsh1236I	CGCG	2 cut(s)	100, 211
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	221, 273
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	45, 129
BslI	CCNNNNNNNGG	2 cut(s)	85, 280
BsnI	GGCC	2 cut(s)	221, 273
Bsp1286I	GDGCHC	2 cut(s)	139, 302
Bsp143I	GATC	5 cut(s)	57, 61, 67, 116, 253
Bsp1720I	GCTNAGC	1 cut(s)	301
BspACI	CCGC	6 cut(s)	98, 100, 132, 169, 177, 244
BspANI	GGCC	2 cut(s)	221, 273
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	2 cut(s)	100, 211
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	65, 124, 261
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	98, 274
BssMI	GATC	5 cut(s)	57, 61, 67, 116, 253
Bst2UI	CCWGG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	301
BstDSI	CCRYGG	2 cut(s)	98, 274
BstF5I	GGATG	2 cut(s)	35, 151
BstFNI	CGCG	2 cut(s)	100, 211
BstKTI	GATC	5 cut(s)	60, 64, 70, 119, 256
BstMBI	GATC	5 cut(s)	57, 61, 67, 116, 253
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 265
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	44, 221
BstUI	CGCG	2 cut(s)	100, 211
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	116, 253
BstYI	RGATCY	2 cut(s)	116, 253
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	221, 273
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	2 cut(s)	98, 274
BtsCI	GGATG	2 cut(s)	35, 151
Cac8I	GCNNGC	1 cut(s)	242
Cfr42I	CCGCGG	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	217
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	8 cut(s)	16, 42, 174, 221, 273, 279, 300, 305
CviKI_1	RGCY	8 cut(s)	16, 42, 174, 221, 273, 279, 300, 305
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	5 cut(s)	59, 63, 69, 118, 255
DpnII	GATC	5 cut(s)	57, 61, 67, 116, 253
EaeI	YGGCCR	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 218
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	98, 175, 178
FokI	GGATG	2 cut(s)	42, 138
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	98, 175, 178
GluI	GCNGC	3 cut(s)	98, 175, 178
GsaI	CCCAGC	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	221, 273
HapII	CCGG	2 cut(s)	45, 129
HgaI	GACGC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	88
HpaII	CCGG	2 cut(s)	45, 129
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 265
HpyF3I	CTNAG	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	88
KspI	CCGCGG	1 cut(s)	101
Kzo9I	GATC	5 cut(s)	57, 61, 67, 116, 253
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	187
MalI	GATC	5 cut(s)	59, 63, 69, 118, 255
MboI	GATC	5 cut(s)	57, 61, 67, 116, 253
MflI	RGATCY	2 cut(s)	116, 253
MhlI	GDGCHC	2 cut(s)	139, 302
MluI	ACGCGT	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	6, 82
MroXI	GAANNNNTTC	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	2 cut(s)	45, 129
MspR9I	CCNGG	2 cut(s)	46, 223
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	100, 211
MwoI	GCNNNNNNNGC	2 cut(s)	241, 265
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	5 cut(s)	57, 61, 67, 116, 253
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	99, 176, 179
Psp6I	CCWGG	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	116, 253
SacII	CCGCGG	1 cut(s)	101
SatI	GCNGC	3 cut(s)	98, 175, 178
Sau3AI	GATC	5 cut(s)	57, 61, 67, 116, 253
ScrFI	CCNGG	2 cut(s)	46, 223
SduI	GDGCHC	2 cut(s)	139, 302
SetI	ASST	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	187
Sfr303I	CCGCGG	1 cut(s)	101
SgrBI	CCGCGG	1 cut(s)	101
SsiI	CCGC	6 cut(s)	98, 100, 132, 169, 177, 244
StyD4I	CCNGG	2 cut(s)	44, 221
TaqI	TCGA	2 cut(s)	60, 66
TauI	GCSGC	2 cut(s)	100, 180
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	129
Van91I	CCANNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.