Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005464

Physical Location & Seq

Genomic Coordinates Forward (+)

14953081 .. 14954430

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTGAAACAGAACAAACATATCAATCGCCCCTGCCCAGTTCAGATACTGTAAGAGATATATTCCTATGGAAGAAGAAGAAACAGAGTGTGCTTGTTCTTTTGATAGCAACAACAACATGGATTTTGCTCAAAGTCTATCGTTTCAACTTCCTGACTCTAATTTCATGGGCGGCGATGTTTATTGTTACTTCTTTGTTCCTTTGGGGCAACATGCTTAGGTTCTTTAACAAAGAACCTCCAAATTTGTATGGAATGTTGGAGGTAACTGAGGAGACGGCTTTGGAAACAGCGAATACCATTCAAGCATGGATTGAAGAAGGAATTCGATGGGTGTTTCGTGTGGCCGCTGAGAGAGAGTGGTTTGTATTTGCCGGGACTGCCACAGGTTTATGGTTACTCTCTCGTGTAGGGAGATACTTTGATCTGCTCACCCTTCTTTATACAGGCGTGGTTATGGGCATGACTATTCCTGTGATATATGCGAGGTACAAGGAAAATCTCAAGAGGAGTGAGGAGTGGGTGAAGGCACAGGCAAGAATGTACTATAACATGATGGATGAAAAGGTAGTCAAGAATATAAAGAACAAGGTGACGGTCACCAAAGAGAATTATAAGGACAAGAAGGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071782 GO:0071786 GO:0071840 GO:0098552 GO:0098554 GO:0098562 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

212

Amino Acids

24.88

Weight (kDa)

9.35

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Reticulon	PF02453	18 - 169	4.6e-39	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23640
fragaria_vesca	FvH4_1g15000
malus_domestica	MD02G1163700.v1.1
prunus_persica	Prupe.7G140200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104061 RchiOBHm_Chr5g0051761 RchiOBHm_Chr7g0214661
rosa_laevigata	RLG00000017283
rosa_multiflora	Rmu_sc0000193.1_g000008 Rmu_sc0002928.1_g000029 Rmu_sc0003428.1_g000005 Rmu_sc0004608.1_g000001 Rmu_sc0023132.1_g000001 Rmu_ssc0000257.1_g000030
rosa_roxburghii	Rroxscaffold_1G00062260 Rroxscaffold_2G00139150 Rroxscaffold_3G00240540 Rroxscaffold_5G00360630
rosa_rugosa	Rorug02G0119200 Rorug02G0119200 Rorug03G0175100 Rorug04G0038900
rosa_samantha	Rh2AG168300 Rh2BG175300 Rh2CG174200 Rh2DG173800 Rh4BG357900 Rh6DG327700
rosa_wichuraiana	Rw2G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AciI	CCGC	2 cut(s)	173, 348
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	244, 324
AfaI	GTAC	2 cut(s)	491, 545
AgsI	TTSAA	3 cut(s)	148, 305, 317
Alw26I	GTCTC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	345
ApoI	RAATTY	2 cut(s)	244, 324
Asp700I	GAANNNNTTC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	4 cut(s)	424, 535, 592, 604
BauI	CACGAG	1 cut(s)	405
BccI	CCATC	2 cut(s)	324, 550
BceAI	ACGGC	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	174, 348
BlsI	GCNGC	2 cut(s)	175, 349
Bme1390I	CCNGG	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	261, 342
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	3 cut(s)	287, 523, 530
BshFI	GGCC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	2 cut(s)	173, 348
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	262, 343
BsrI	ACTGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	424
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	52, 598
BstDEI	CTNAG	3 cut(s)	218, 270, 351
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	217
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	565
CaiI	CAGNNNCTG	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	490, 544
CviAII	CATG	6 cut(s)	120, 168, 214, 309, 463, 553
CviJI	RGCY	2 cut(s)	281, 347
CviKI_1	RGCY	2 cut(s)	281, 347
CviQI	GTAC	2 cut(s)	490, 544
DdeI	CTNAG	3 cut(s)	218, 270, 351
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	598
EcoO65I	GGTNACC	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	6 cut(s)	123, 171, 217, 312, 466, 556
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	6 cut(s)	119, 167, 213, 308, 462, 552
Fnu4HI	GCNGC	2 cut(s)	174, 348
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	2 cut(s)	174, 348
GluI	GCNGC	2 cut(s)	174, 348
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	6 cut(s)	123, 171, 217, 312, 466, 556
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	4 cut(s)	424, 535, 592, 604
Hpy188I	TCNGA	2 cut(s)	7, 46
Hpy188III	TCNNGA	3 cut(s)	154, 505, 574
HpyAV	CCTTC	4 cut(s)	314, 446, 520, 619
HpyCH4III	ACNGT	2 cut(s)	52, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	3 cut(s)	218, 270, 351
Hsp92II	CATG	6 cut(s)	123, 171, 217, 312, 466, 556
Kzo9I	GATC	1 cut(s)	424
LpnPI	CCDG	8 cut(s)	47, 52, 167, 372, 388, 432, 486, 518
MaeIII	GTNAC	5 cut(s)	187, 265, 396, 592, 598
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	4 cut(s)	85, 88, 91, 329
MluCI	AATT	4 cut(s)	162, 244, 324, 610
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	249, 256, 265, 480, 501, 508
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	6 cut(s)	123, 171, 217, 312, 466, 556
NmuCI	GTSAC	2 cut(s)	592, 598
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	175, 349
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PsiI	TTATAA	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	491, 545
RsaNI	GTAC	2 cut(s)	490, 544
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	174, 348
Sau3AI	GATC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	376
SetI	ASST	8 cut(s)	224, 241, 267, 391, 491, 570, 594, 630
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	162, 244, 324, 610
SsiI	CCGC	2 cut(s)	173, 348
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	52, 598
TaqI	TCGA	1 cut(s)	328
TasI	AATT	4 cut(s)	162, 244, 324, 610
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	2 cut(s)	176, 350
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	592, 598
Tsp45I	GTSAC	2 cut(s)	592, 598
TspDTI	ATGAA	2 cut(s)	156, 576
XapI	RAATTY	2 cut(s)	244, 324
XceI	RCATGY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.