Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Forward (+)

10401456 .. 10402897

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAGGATTGGTTTGATGAGGAGTATGAGGTTTGGGACCCAGCCGCGGCGCGGCGAGAGGGAGCTTATTGGTACAGAGTTTACAATGAGGGACTGGAAGCTTTCGAGGATGCTGAAGCAGTCAGGATTGGAGTTCAATGAGGGTCAGGTTTTGAAGGGGCTTGGTGTTAAGAAATGTTGGAAGCAGGCGTTGACTGTGGTGGAATGGGTTTATAAGGACAGGGGCAATAACCACTGCAAAAGCAGGTTTGTATACACAAAGCTTTTGTCAATTCTTCGGAAGGCAGGAAGGCCACAGGAAGCTCTTGACATTTTCAACAAGATGTGTGGAGATTGTCATATATATCCAGATATTGCTGCCTATCACAGTATTGCTGTTACACTCGGCCAAACAGGTCGTCTGAAGGAATTGCTGAAAGTTATCGAATGCATGAGGCAGAAACCTGTCAAAATAAATAGATATATATTTCGCAACTGGGACCCTGTCCTTGAACCGGATGTAGTTGTGTATAATGCTATACTGAATGCTTGTGTTCAATCCCATCAGTGGAAGAGTGTATATTGGGTGTTTAACCAGTTGAGAAAGAGTGGTCTGAAACCTAATGGAGCAACACACGGGCTTGCTATGGAGGTAGTATCTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

216

Amino Acids

24.83

Weight (kDa)

9.87

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	163 - 206	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	165 - 205	1.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	46, 51
AciI	CCGC	3 cut(s)	44, 46, 51
AcoI	YGGCCR	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	134, 422
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	4 cut(s)	45, 50, 493, 546
AgsI	TTSAA	5 cut(s)	136, 154, 316, 491, 536
AluBI	AGCT	4 cut(s)	64, 100, 262, 302
AluI	AGCT	4 cut(s)	64, 100, 262, 302
AoxI	GGCC	2 cut(s)	290, 385
ApeKI	GCWGC	1 cut(s)	356
ArsI	GACNNNNNNTTYG	4 cut(s)	251, 283, 382, 414
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	36, 478
AvaII	GGWCC	2 cut(s)	36, 478
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	4 cut(s)	44, 47, 52, 357
BlsI	GCNGC	4 cut(s)	45, 48, 53, 358
Bme18I	GGWCC	2 cut(s)	36, 478
BmgT120I	GGNCC	2 cut(s)	36, 478
BmiI	GGNNCC	4 cut(s)	37, 38, 479, 480
BmrI	ACTGGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 50, 493, 546
Bse1I	ACTGG	3 cut(s)	98, 479, 574
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	114, 502
BseLI	CCNNNNNNNGG	4 cut(s)	45, 50, 493, 546
BseNI	ACTGG	3 cut(s)	98, 479, 574
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	39
Bsh1236I	CGCG	2 cut(s)	46, 51
BshFI	GGCC	2 cut(s)	292, 387
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	3 cut(s)	49, 104, 491
BslI	CCNNNNNNNGG	4 cut(s)	45, 50, 493, 546
BsmFI	GGGAC	3 cut(s)	49, 104, 491
BsmI	GAATGC	2 cut(s)	431, 529
BsnI	GGCC	2 cut(s)	292, 387
BspACI	CCGC	3 cut(s)	44, 46, 51
BspANI	GGCC	2 cut(s)	292, 387
BspFNI	CGCG	2 cut(s)	46, 51
BspLI	GGNNCC	4 cut(s)	37, 38, 479, 480
BspMI	ACCTGC	1 cut(s)	234
BsrI	ACTGG	3 cut(s)	98, 479, 574
BssECI	CCNNGG	1 cut(s)	44
BssNAI	GTATAC	1 cut(s)	253
Bst1107I	GTATAC	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	196, 368
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	186, 621
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	114, 502
BstFNI	CGCG	2 cut(s)	46, 51
BstHHI	GCGC	1 cut(s)	51
BstUI	CGCG	2 cut(s)	46, 51
BstV1I	GCAGC	1 cut(s)	343
BstZ17I	GTATAC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	292, 387
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	114, 502
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 551
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	186, 621
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	36, 478
Cfr42I	CCGCGG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	72
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	1 cut(s)	430
CviJI	RGCY	9 cut(s)	43, 64, 100, 160, 262, 292, 302, 387, 619
CviKI_1	RGCY	9 cut(s)	43, 64, 100, 160, 262, 292, 302, 387, 619
CviQI	GTAC	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco47I	GGWCC	2 cut(s)	36, 478
Eco57I	CTGAAG	2 cut(s)	134, 422
EcoO109I	RGGNCCY	2 cut(s)	36, 478
EcoT22I	ATGCAT	1 cut(s)	431
FaeI	CATG	1 cut(s)	433
FaqI	GGGAC	3 cut(s)	49, 104, 491
FatI	CATG	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	44, 47, 52, 357
FokI	GGATG	2 cut(s)	121, 509
Fsp4HI	GCNGC	4 cut(s)	44, 47, 52, 357
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	4 cut(s)	44, 47, 52, 357
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	292, 387
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	2 cut(s)	98, 260
HpaII	CCGG	1 cut(s)	494
Hpy166II	GTNNAC	3 cut(s)	81, 192, 253
Hpy188I	TCNGA	3 cut(s)	279, 402, 594
Hpy188III	TCNNGA	4 cut(s)	123, 305, 347, 639
Hpy8I	GTNNAC	3 cut(s)	81, 192, 253
HpyAV	CCTTC	4 cut(s)	148, 274, 282, 397
HpyCH4III	ACNGT	2 cut(s)	196, 368
HpyCH4V	TGCA	2 cut(s)	237, 429
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	1 cut(s)	49
KflI	GGGWCCC	2 cut(s)	36, 478
KspI	CCGCGG	1 cut(s)	47
LmnI	GCTCC	2 cut(s)	61, 605
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	266, 562
MluCI	AATT	2 cut(s)	270, 407
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	8 cut(s)	12, 21, 51, 81, 99, 133, 426, 622
Mph1103I	ATGCAT	1 cut(s)	431
MseI	TTAA	2 cut(s)	168, 570
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	494
Mva1269I	GAATGC	2 cut(s)	431, 529
MvnI	CGCG	2 cut(s)	46, 51
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	4 cut(s)	37, 38, 479, 480
NmeAIII	GCCGAG	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	431
PctI	GAATGC	2 cut(s)	431, 529
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	4 cut(s)	45, 48, 53, 358
PpuMI	RGGWCCY	2 cut(s)	36, 478
PsiI	TTATAA	1 cut(s)	213
Psp5II	RGGWCCY	2 cut(s)	36, 478
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	4 cut(s)	37, 38, 479, 480
PspPI	GGNCC	2 cut(s)	36, 478
PspPPI	RGGWCCY	2 cut(s)	36, 478
PsyI	GACNNNGTC	1 cut(s)	482
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	168, 570
SatI	GCNGC	4 cut(s)	44, 47, 52, 357
Sau96I	GGNCC	2 cut(s)	36, 478
SfaNI	GCATC	1 cut(s)	99
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	36, 478
Sse9I	AATT	2 cut(s)	270, 407
SsiI	CCGC	3 cut(s)	44, 46, 51
TaaI	ACNGT	2 cut(s)	196, 368
TaqI	TCGA	2 cut(s)	104, 423
TasI	AATT	2 cut(s)	270, 407
TauI	GCSGC	3 cut(s)	46, 49, 54
Tru1I	TTAA	2 cut(s)	168, 570
Tru9I	TTAA	2 cut(s)	168, 570
TscAI	CASTG	2 cut(s)	239, 551
TseI	GCWGC	1 cut(s)	356
TspRI	CASTG	2 cut(s)	239, 551
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	36, 478
XmiI	GTMKAC	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.