Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002530.1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

75930 .. 77553

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002530.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ctgaaagccgagtacagaagcttcaccagagccgtgaaatcaaagaatggtggcggtgaattgacggttgggatgccttgggagagagtggagagaattgggttccgggagctggcgagtagtagcggtgaatatggtggagagaagctaaagaaggaggagttgaatgcattgagggaaatgtttgaaacccgaaaaagggaagagctgaaatgggtgttggatgatgatgtggagataaaagaggagtggtttgatggtgagaatagggtgtcggacccgacgaagcggcggcgtggcgagggggaggtgattcagtttcttgttgagaggcttagtggtttggagttcactgaggggcaggttcttaaggttctgaatggacttggtgctaagaaatgttggaaacaggcattgtctgttgtggaatgggtttataaggacgggggcaataaacactgcaaaagcagctatgttgttgatgctgctgatcctgataacttgagcacctcaagaggggaacttcatgatttgcttagcaaatcctcacttaatggtatcccattgctgatcctgggtaacaagattgatagaccgggagctctgagtaaacaagctttgactgatgaaatgcaagacacatcatggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

217

Amino Acids

24.55

Weight (kDa)

5.68

Isoelectric Point (pI)

26.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
Acc36I	ACCTGC	1 cut(s)	352
AciI	CCGC	4 cut(s)	54, 126, 289, 292
AclWI	GGATC	2 cut(s)	485, 565
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	4 cut(s)	112, 198, 199, 516
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	166, 188
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	4 cut(s)	51, 83, 203, 235
AluBI	AGCT	7 cut(s)	21, 112, 148, 208, 471, 602, 617
AluI	AGCT	7 cut(s)	21, 112, 148, 208, 471, 602, 617
Alw21I	GWGCWC	2 cut(s)	509, 604
AlwI	GGATC	2 cut(s)	485, 565
ApeKI	GCWGC	2 cut(s)	468, 485
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	2 cut(s)	107, 597
AsuHPI	GGTGA	5 cut(s)	16, 68, 140, 272, 322
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	604
BarI	GAAGNNNNNNTAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	509, 604
BbvI	GCAGC	2 cut(s)	472, 480
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	569
BcnI	CCSGG	2 cut(s)	107, 597
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	290, 293, 469, 486
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	4 cut(s)	291, 294, 470, 487
Bme1390I	CCNGG	3 cut(s)	107, 575, 597
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	104, 279
BmrFI	CCNGG	3 cut(s)	107, 575, 597
BmsI	GCATC	2 cut(s)	63, 472
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	2 cut(s)	496, 523
BpuMI	CCSGG	2 cut(s)	107, 597
BsaJI	CCNNGG	2 cut(s)	77, 574
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 198, 199, 516
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	77, 574
BseGI	GGATG	2 cut(s)	78, 229
BseLI	CCNNNNNNNGG	4 cut(s)	112, 198, 199, 516
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	345, 596
BseRI	GAGGAG	2 cut(s)	173, 260
BseXI	GCAGC	2 cut(s)	472, 480
BsiHKAI	GWGCWC	2 cut(s)	509, 604
BsiSI	CCGG	2 cut(s)	106, 596
BslI	CCNNNNNNNGG	4 cut(s)	112, 198, 199, 516
BsmI	GAATGC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	509, 604
Bsp143I	GATC	2 cut(s)	490, 570
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	4 cut(s)	54, 126, 289, 292
BspCNI	CTCAG	2 cut(s)	346, 597
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	104, 279
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	2 cut(s)	485, 565
BspQI	GCTCTTC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	77, 574
BssMI	GATC	2 cut(s)	490, 570
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	335, 354, 393, 536, 605
BstF5I	GGATG	2 cut(s)	78, 229
BstKTI	GATC	2 cut(s)	493, 573
BstMBI	GATC	2 cut(s)	490, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	105, 573, 595
BstV1I	GCAGC	2 cut(s)	472, 480
BsuI	GTATCC	1 cut(s)	569
BtsCI	GGATG	2 cut(s)	78, 229
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	351, 457
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	527, 645
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	5 cut(s)	335, 354, 393, 536, 605
DpnI	GATC	2 cut(s)	492, 572
DpnII	GATC	2 cut(s)	490, 570
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	530, 648
FaiI	YATR	5 cut(s)	135, 438, 474, 528, 646
FatI	CATG	2 cut(s)	526, 644
Fnu4HI	GCNGC	4 cut(s)	290, 293, 469, 486
FokI	GGATG	2 cut(s)	85, 236
FriOI	GRGCYC	1 cut(s)	604
Fsp4HI	GCNGC	4 cut(s)	290, 293, 469, 486
GluI	GCNGC	4 cut(s)	290, 293, 469, 486
HapII	CCGG	2 cut(s)	106, 596
Hin1II	CATG	2 cut(s)	530, 648
HindIII	AAGCTT	2 cut(s)	19, 615
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	106, 596
HphI	GGTGA	5 cut(s)	16, 68, 140, 272, 322
Hpy166II	GTNNAC	2 cut(s)	351, 611
Hpy188I	TCNGA	3 cut(s)	277, 378, 606
Hpy188III	TCNNGA	3 cut(s)	494, 513, 527
Hpy8I	GTNNAC	2 cut(s)	351, 611
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	170, 462, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	5 cut(s)	335, 354, 393, 536, 605
Hsp92II	CATG	2 cut(s)	530, 648
Kzo9I	GATC	2 cut(s)	490, 570
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	2 cut(s)	109, 599
LpnPI	CCDG	9 cut(s)	40, 98, 119, 347, 395, 507, 560, 587, 609
Lsp1109I	GCAGC	2 cut(s)	472, 480
LweI	GCATC	2 cut(s)	63, 472
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	2 cut(s)	492, 572
MboI	GATC	2 cut(s)	490, 570
MboII	GAAGA	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	509, 604
MluCI	AATT	2 cut(s)	59, 96
MmeI	TCCRAC	3 cut(s)	201, 255, 383
Mph1103I	ATGCAT	1 cut(s)	172
MseI	TTAA	2 cut(s)	369, 552
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	106, 596
MspR9I	CCNGG	3 cut(s)	107, 575, 597
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	468
NciI	CCSGG	2 cut(s)	107, 597
NdeII	GATC	2 cut(s)	490, 570
NlaIII	CATG	2 cut(s)	530, 648
NlaIV	GGNNCC	2 cut(s)	104, 279
NmeAIII	GCCGAG	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	172
PagI	TCATGA	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	313
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	4 cut(s)	291, 294, 470, 487
PsiI	TTATAA	1 cut(s)	438
Psp124BI	GAGCTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	104, 279
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	369, 552
SatI	GCNGC	4 cut(s)	290, 293, 469, 486
Sau3AI	GATC	2 cut(s)	490, 570
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	107, 575, 597
SduI	GDGCHC	2 cut(s)	509, 604
SfaNI	GCATC	2 cut(s)	63, 472
SinI	GGWCC	1 cut(s)	277
SmlI	CTYRAG	3 cut(s)	368, 502, 511
SmoI	CTYRAG	3 cut(s)	368, 502, 511
Sse9I	AATT	2 cut(s)	59, 96
SsiI	CCGC	4 cut(s)	54, 126, 289, 292
SstI	GAGCTC	1 cut(s)	604
StyD4I	CCNGG	3 cut(s)	105, 573, 595
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	2 cut(s)	59, 96
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	2 cut(s)	292, 295
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	369, 552
Tru9I	TTAA	2 cut(s)	369, 552
TscAI	CASTG	2 cut(s)	358, 464
TseI	GCWGC	2 cut(s)	468, 485
TspDTI	ATGAA	2 cut(s)	515, 642
TspRI	CASTG	2 cut(s)	358, 464
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.