Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Forward (+)

19911064 .. 19911615

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAAGCTCTGCAAGGATCCCTCCCTCAAATCACAAACCCCCAATTCGAACCCAACACTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTACACCCGACTCCCAAAATCGTCCACACTCTCCGCAAGAAACAAATCCAGAAACACAACCGCAAACTCAACCGCCTCAACGAACAAGACCCACCTCTCTCCCAGTCCCAAAGCCAAGCCCCTTCCGAAGAAACCCATTTCCAAACCCTGAAAGCCGAGTACAGAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGCGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTAGTAGCGGTGAGTATGGTGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTTGAAATGGAGATAAAAGAGGAGTGGTTTGATGGTGAGAATAGGGTGTCGGACCCGACGAAGCGGCGGCGTGGCGAGGGGGAGGTGATTCAGTTTCTTGTTGAGAGGTTTGTGTTGGGGTTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

183

Amino Acids

21.22

Weight (kDa)

9.3

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	127, 154, 166, 294, 366, 487, 490
AclWI	GGATC	2 cut(s)	12, 25
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	96, 254
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	406, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	4 cut(s)	8, 261, 352, 388
AluI	AGCT	4 cut(s)	8, 261, 352, 388
AlwI	GGATC	2 cut(s)	12, 25
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	6 cut(s)	73, 256, 308, 380, 470, 520
AsuII	TTCGAA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BccI	CCATC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	488, 491
BlsI	GCNGC	2 cut(s)	489, 492
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	19, 344, 477
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	413, 458
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	7 cut(s)	127, 154, 166, 294, 366, 487, 490
BspLI	GGNNCC	3 cut(s)	19, 344, 477
BspPI	GGATC	2 cut(s)	12, 25
BspT104I	TTCGAA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	95, 253
CviJI	RGCY	8 cut(s)	8, 207, 212, 248, 261, 272, 352, 388
CviKI_1	RGCY	8 cut(s)	8, 207, 212, 248, 261, 272, 352, 388
CviQI	GTAC	2 cut(s)	95, 253
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	317
FaiI	YATR	1 cut(s)	375
FaqI	GGGAC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	488, 491
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	488, 491
GluI	GCNGC	2 cut(s)	488, 491
HapII	CCGG	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	2 cut(s)	103, 511
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	6 cut(s)	73, 256, 308, 380, 470, 520
Hpy166II	GTNNAC	2 cut(s)	97, 118
Hpy188I	TCNGA	2 cut(s)	220, 475
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	97, 118
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	2 cut(s)	225, 388
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	13, 410
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	6 cut(s)	155, 209, 254, 280, 338, 359
LweI	GCATC	1 cut(s)	303
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	233, 403
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	3 cut(s)	44, 299, 336
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	412
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	19, 344, 477
NmeAIII	GCCGAG	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	489, 492
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	19, 344, 477
PspPI	GGNCC	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	96, 254
RsaNI	GTAC	2 cut(s)	95, 253
SatI	GCNGC	2 cut(s)	488, 491
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	8 cut(s)	10, 81, 190, 263, 354, 390, 510, 533
SfaNI	GCATC	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	1 cut(s)	475
Sse9I	AATT	3 cut(s)	44, 299, 336
SsiI	CCGC	7 cut(s)	127, 154, 166, 294, 366, 487, 490
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	44, 299, 336
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	2 cut(s)	490, 493
TfiI	GAWTC	1 cut(s)	511
TscAI	CASTG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.