Pentatricopeptide repeat-containing protein At5g67570
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g17890 |
| malus_domestica | MD03G1080500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171 |
| rosa_laevigata | RLG00000017641 RLG00000017644 |
| rosa_multiflora | Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620 |
| rosa_rugosa | Rorug02G0150800 |
| rosa_samantha | Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400 |
| rosa_wichuraiana | Rw2G015860 Rw2G015880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 168 |
| AciI | CCGC | 5 cut(s) | 127, 154, 166, 294, 366 |
| AclWI | GGATC | 2 cut(s) | 12, 25 |
| AcuI | CTGAAG | 1 cut(s) | 410 |
| AfaI | GTAC | 2 cut(s) | 96, 254 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 352, 439, 440 |
| AgsI | TTSAA | 1 cut(s) | 407 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 291, 323, 444 |
| AluBI | AGCT | 5 cut(s) | 8, 261, 352, 388, 449 |
| AluI | AGCT | 5 cut(s) | 8, 261, 352, 388, 449 |
| AlwI | GGATC | 2 cut(s) | 12, 25 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 29, 61 |
| AsuHPI | GGTGA | 4 cut(s) | 73, 256, 308, 380 |
| AsuII | TTCGAA | 2 cut(s) | 48, 427 |
| BamHI | GGATCC | 1 cut(s) | 17 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 245, 277 |
| BceAI | ACGGC | 1 cut(s) | 257 |
| BisI | GCNGC | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 155 |
| BmiI | GGNNCC | 2 cut(s) | 19, 344 |
| BmsI | GCATC | 1 cut(s) | 303 |
| Bpu14I | TTCGAA | 2 cut(s) | 48, 427 |
| BsaJI | CCNNGG | 1 cut(s) | 317 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 352, 439, 440 |
| BseDI | CCNNGG | 1 cut(s) | 317 |
| BseGI | GGATG | 1 cut(s) | 318 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 352, 439, 440 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseRI | GAGGAG | 2 cut(s) | 413, 459 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 352, 439, 440 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| BsmI | GAATGC | 1 cut(s) | 413 |
| Bsp119I | TTCGAA | 2 cut(s) | 48, 427 |
| Bsp143I | GATC | 1 cut(s) | 17 |
| BspACI | CCGC | 5 cut(s) | 127, 154, 166, 294, 366 |
| BspCNI | CTCAG | 1 cut(s) | 47 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspLI | GGNNCC | 2 cut(s) | 19, 344 |
| BspPI | GGATC | 2 cut(s) | 12, 25 |
| BspT104I | TTCGAA | 2 cut(s) | 48, 427 |
| BssECI | CCNNGG | 1 cut(s) | 317 |
| BssMI | GATC | 1 cut(s) | 17 |
| BssT1I | CCWWGG | 1 cut(s) | 317 |
| Bst4CI | ACNGT | 2 cut(s) | 59, 307 |
| BstBI | TTCGAA | 2 cut(s) | 48, 427 |
| BstC8I | GCNNGC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 1 cut(s) | 34 |
| BstF5I | GGATG | 1 cut(s) | 318 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstKTI | GATC | 1 cut(s) | 20 |
| BstMBI | GATC | 1 cut(s) | 17 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstX2I | RGATCY | 1 cut(s) | 17 |
| BstYI | RGATCY | 1 cut(s) | 17 |
| BtsCI | GGATG | 1 cut(s) | 318 |
| BtsIMutI | CAGTG | 1 cut(s) | 64 |
| Cac8I | GCNNGC | 1 cut(s) | 354 |
| CseI | GACGC | 1 cut(s) | 157 |
| Csp6I | GTAC | 2 cut(s) | 95, 253 |
| CviQI | GTAC | 2 cut(s) | 95, 253 |
| DdeI | CTNAG | 1 cut(s) | 34 |
| DpnI | GATC | 1 cut(s) | 19 |
| DpnII | GATC | 1 cut(s) | 17 |
| Eco130I | CCWWGG | 1 cut(s) | 317 |
| Eco57I | CTGAAG | 1 cut(s) | 410 |
| EcoT14I | CCWWGG | 1 cut(s) | 317 |
| ErhI | CCWWGG | 1 cut(s) | 317 |
| FaiI | YATR | 1 cut(s) | 375 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| Fnu4HI | GCNGC | 1 cut(s) | 154 |
| FokI | GGATG | 1 cut(s) | 325 |
| Fsp4HI | GCNGC | 1 cut(s) | 154 |
| GluI | GCNGC | 1 cut(s) | 154 |
| HgaI | GACGC | 1 cut(s) | 157 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 1 cut(s) | 259 |
| HinfI | GANTC | 1 cut(s) | 197 |
| HphI | GGTGA | 4 cut(s) | 73, 256, 308, 380 |
| Hpy166II | GTNNAC | 3 cut(s) | 97, 118, 172 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 196, 220, 347 |
| Hpy188III | TCNNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 3 cut(s) | 97, 118, 172 |
| HpyAV | CCTTC | 1 cut(s) | 388 |
| HpyCH4III | ACNGT | 2 cut(s) | 59, 307 |
| HpyCH4V | TGCA | 1 cut(s) | 13 |
| HpyF3I | CTNAG | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 17 |
| LmnI | GCTCC | 1 cut(s) | 446 |
| LpnPI | CCDG | 5 cut(s) | 66, 155, 254, 280, 338 |
| LweI | GCATC | 1 cut(s) | 303 |
| MalI | GATC | 1 cut(s) | 19 |
| MboI | GATC | 1 cut(s) | 17 |
| MboII | GAAGA | 2 cut(s) | 233, 403 |
| MflI | RGATCY | 1 cut(s) | 17 |
| MluCI | AATT | 3 cut(s) | 44, 299, 336 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MmeI | TCCRAC | 1 cut(s) | 442 |
| MnlI | CCTC | 8 cut(s) | 32, 36, 89, 198, 391, 394, 409, 437 |
| Mva1269I | GAATGC | 1 cut(s) | 413 |
| MvnI | CGCG | 1 cut(s) | 168 |
| NdeII | GATC | 1 cut(s) | 17 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 344 |
| NmeAIII | GCCGAG | 1 cut(s) | 274 |
| NspV | TTCGAA | 2 cut(s) | 48, 427 |
| PctI | GAATGC | 1 cut(s) | 413 |
| PkrI | GCNGC | 1 cut(s) | 155 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 344 |
| PsuI | RGATCY | 1 cut(s) | 17 |
| RsaI | GTAC | 2 cut(s) | 96, 254 |
| RsaNI | GTAC | 2 cut(s) | 95, 253 |
| SatI | GCNGC | 1 cut(s) | 154 |
| Sau3AI | GATC | 1 cut(s) | 17 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SetI | ASST | 8 cut(s) | 10, 81, 190, 263, 354, 390, 405, 451 |
| SfaNI | GCATC | 1 cut(s) | 303 |
| SfuI | TTCGAA | 2 cut(s) | 48, 427 |
| Sse9I | AATT | 3 cut(s) | 44, 299, 336 |
| SsiI | CCGC | 5 cut(s) | 127, 154, 166, 294, 366 |
| StyI | CCWWGG | 1 cut(s) | 317 |
| TaaI | ACNGT | 2 cut(s) | 59, 307 |
| TaqI | TCGA | 2 cut(s) | 48, 427 |
| TasI | AATT | 3 cut(s) | 44, 299, 336 |
| TatI | WGTACW | 1 cut(s) | 252 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 64 |
| TspRI | CASTG | 1 cut(s) | 64 |