Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002530.1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

88686 .. 90161

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002530.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgccttgggagagagtggagagaattgggttccgggagctggcgagtagtagcggtgagtatggtggagagaagctgaagaaggaggagtttaatgcattgagggaaatgttcgaaacccgaaaaagggaggagctgaaatgggtgttggatgatcattggtacggagtttgcaatgagggactggaagtttcgaggatgatgaagcagtcagatcctgataacttgagcacctcaagaggggaacttcatgatttgcttagcaaatcctcactaaatggtatcccattgctgatcctgggtaacaagattgataaaccgggagctctgagtaaacaagctttgactgatgaaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

119

Amino Acids

13.64

Weight (kDa)

5.28

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	209, 289
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 240
AjnI	CCWGG	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	40, 76, 136, 326, 341
AluI	AGCT	5 cut(s)	40, 76, 136, 326, 341
Alw21I	GWGCWC	2 cut(s)	233, 328
AlwI	GGATC	2 cut(s)	209, 289
AlwNI	CAGNNNCTG	1 cut(s)	218
AsuC2I	CCSGG	2 cut(s)	35, 321
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	328
Bbv12I	GWGCWC	2 cut(s)	233, 328
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	35, 321
BfuI	GTATCC	1 cut(s)	293
BlpI	GCTNAGC	1 cut(s)	260
Bme1390I	CCNGG	3 cut(s)	35, 299, 321
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	3 cut(s)	35, 299, 321
Bpu1102I	GCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	220, 247
BpuMI	CCSGG	2 cut(s)	35, 321
BsaJI	CCNNGG	2 cut(s)	5, 298
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 240
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	181, 287
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	5, 298
BseGI	GGATG	2 cut(s)	157, 204
BseLI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 240
BseMI	GCAATG	2 cut(s)	181, 287
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	101, 146
BsiHKAI	GWGCWC	2 cut(s)	233, 328
BsiSI	CCGG	2 cut(s)	34, 320
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 240
BsmFI	GGGAC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	233, 328
Bsp143I	GATC	3 cut(s)	154, 214, 294
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	209, 289
BspT104I	TTCGAA	1 cut(s)	114
BsrDI	GCAATG	2 cut(s)	181, 287
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	5, 298
BssMI	GATC	3 cut(s)	154, 214, 294
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	260, 329
BstF5I	GGATG	2 cut(s)	157, 204
BstKTI	GATC	3 cut(s)	157, 217, 297
BstMBI	GATC	3 cut(s)	154, 214, 294
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	33, 297, 319
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	157, 204
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	5 cut(s)	40, 76, 136, 326, 341
CviKI_1	RGCY	5 cut(s)	40, 76, 136, 326, 341
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	260, 329
DpnI	GATC	3 cut(s)	156, 216, 296
DpnII	GATC	3 cut(s)	154, 214, 294
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	63, 252
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	154
FokI	GGATG	2 cut(s)	164, 211
FriOI	GRGCYC	1 cut(s)	328
HapII	CCGG	2 cut(s)	34, 320
Hin1II	CATG	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	339
HpaII	CCGG	2 cut(s)	34, 320
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	2 cut(s)	214, 330
Hpy188III	TCNNGA	3 cut(s)	218, 237, 251
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	98, 174
HpyF3I	CTNAG	2 cut(s)	260, 329
Hsp92II	CATG	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	154, 214, 294
LmnI	GCTCC	3 cut(s)	37, 133, 323
LpnPI	CCDG	7 cut(s)	26, 47, 170, 231, 284, 311, 333
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	156, 216, 296
MboI	GATC	3 cut(s)	154, 214, 294
MboII	GAAGA	1 cut(s)	91
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	233, 328
MluCI	AATT	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	79, 96, 124, 172, 189, 233, 244, 280
Mph1103I	ATGCAT	1 cut(s)	100
MseI	TTAA	1 cut(s)	93
MspI	CCGG	2 cut(s)	34, 320
MspR9I	CCNGG	3 cut(s)	35, 299, 321
MvaI	CCWGG	1 cut(s)	299
NciI	CCSGG	2 cut(s)	35, 321
NdeII	GATC	3 cut(s)	154, 214, 294
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	32
NsiI	ATGCAT	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	154, 214, 294
ScrFI	CCNGG	3 cut(s)	35, 299, 321
SduI	GDGCHC	2 cut(s)	233, 328
SetI	ASST	6 cut(s)	42, 78, 138, 236, 328, 343
SfuI	TTCGAA	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	226, 235
SmoI	CTYRAG	2 cut(s)	226, 235
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	328
StyD4I	CCNGG	3 cut(s)	33, 297, 319
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	2 cut(s)	114, 194
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TspDTI	ATGAA	2 cut(s)	218, 239
TspGWI	ACGGA	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.