RLG00000017641

Signal recognition particle receptor beta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006906
Physical Location & Seq
Forward (+)
19404038 .. 19404643
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017641

Sequence Viewer

Length: 447 bp
ATGAAAGCCGAGTACAGAAGGTTCACCAAAGCCGTCAAATCAAAGAATGGTGGAGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTAGTAGCGGCGAGTACGGCGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCCGAAAAAGGGAGGAGCTGAAATGGGTGTTGGATGATGATGTGGAGATAAAAGAGGAGTGGCTTAGTGGTACAGAGTTTGCAATGAGGGACTGGAAGCTTTCGAGGATGATGAAGCAGTCAGGTTTGGAGTTCACTGAGGGTCACGTTCTGAAGGTTCTGAATGGACTTGGTGCTAAGAAATGTTGGAAACAGGCATTGTCTGTTGTGGAATGGGTTTATAAGGACAGGGGCAATAAACACTGCAAAAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf PPR

Protein Analysis

149

Amino Acids

17.29

Weight (kDa)

9.3

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 432
AciI CCGC 2 cut(s) 126, 138
AcuI CTGAAG 2 cut(s) 170, 362
AfaI GTAC 3 cut(s) 14, 134, 262
AfiI CCNNNNNNNGG 3 cut(s) 112, 198, 199
AgsI TTSAA 1 cut(s) 166
AjuI GAANNNNNNNTTGG 4 cut(s) 51, 83, 203, 235
AluBI AGCT 4 cut(s) 112, 148, 208, 289
AluI AGCT 4 cut(s) 112, 148, 208, 289
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 16, 68
AsuII TTCGAA 1 cut(s) 186
BceAI ACGGC 2 cut(s) 17, 151
BcnI CCSGG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 432
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 198, 199
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 78, 229, 303
BseLI CCNNNNNNNGG 3 cut(s) 112, 198, 199
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 3 cut(s) 173, 218, 260
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 3 cut(s) 112, 198, 199
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 186
BspACI CCGC 2 cut(s) 126, 138
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 254, 327, 366
BstF5I GGATG 3 cut(s) 78, 229, 303
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 78, 229, 303
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 324, 430
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 13, 133, 261
CviJI RGCY 7 cut(s) 8, 32, 112, 148, 208, 253, 289
CviKI_1 RGCY 7 cut(s) 8, 32, 112, 148, 208, 253, 289
CviQI GTAC 3 cut(s) 13, 133, 261
DdeI CTNAG 3 cut(s) 254, 327, 366
EciI GGCGGA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 170, 362
EcoT14I CCWWGG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 77
FaiI YATR 1 cut(s) 411
FaqI GGGAC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 3 cut(s) 85, 236, 310
Fsp4HI GCNGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 127
HapII CCGG 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 287
HpaII CCGG 1 cut(s) 106
HphI GGTGA 2 cut(s) 16, 68
Hpy166II GTNNAC 2 cut(s) 24, 324
Hpy188I TCNGA 2 cut(s) 342, 351
Hpy8I GTNNAC 2 cut(s) 24, 324
HpyAV CCTTC 3 cut(s) 12, 148, 337
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 170, 272, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 3 cut(s) 254, 327, 366
HpySE526I ACGT 1 cut(s) 336
LmnI GCTCC 2 cut(s) 109, 205
LpnPI CCDG 7 cut(s) 98, 119, 268, 297, 368, 403, 427
LweI GCATC 1 cut(s) 63
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 332
MboII GAAGA 1 cut(s) 163
MluCI AATT 2 cut(s) 59, 96
MmeI TCCRAC 2 cut(s) 201, 356
MnlI CCTC 8 cut(s) 47, 151, 168, 196, 238, 270, 288, 322
Mph1103I ATGCAT 1 cut(s) 172
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 104
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 172
NspV TTCGAA 1 cut(s) 186
PctI GAATGC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 1 cut(s) 128
PsiI TTATAA 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 104
PsrI GAACNNNNNNTAC 1 cut(s) 37
RsaI GTAC 3 cut(s) 14, 134, 262
RsaNI GTAC 3 cut(s) 13, 133, 261
SatI GCNGC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 107
SfaNI GCATC 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 186
Sse9I AATT 2 cut(s) 59, 96
SsiI CCGC 2 cut(s) 126, 138
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 186, 293
TasI AATT 2 cut(s) 59, 96
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 129
TscAI CASTG 2 cut(s) 331, 437
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 17, 317
TspRI CASTG 2 cut(s) 331, 437
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.