Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007406.1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

42778 .. 44354

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007406.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgccttgggagagagtggagagaattgggttccgggagctggcgagtagtagcggtgagtatggtggagagaagctgaagaaggaggagttgaatgcattgagggaaatgttcgaaacccgaaaaagggaggagctgaaatgggtgttggatgatgatgtggagataaaagaggagtggtttgatggtgagaatagggtgtcggacccgacgaagcggcggcgtggcgagggggaggtgattcagtttcttgttgagaggcttagtggtacggagttttcattagactggaagctctggtggatgatgaagcagtcaggtttggaattcactgaggggcaggttcttaaggttctgaatggacttggtgctaagaaatgttggaaacaggcactctgttgtggaatgggggaacagtcgccttccatgaattctagattcagacacaaactctatgttgttgatgctgctgatcctgataacttgagcacctcaagaggggaacttcatgatttgcttagcaaatcctcacttaatggtatcccattgctgatcctgggtaacaagattgatagaccgggagctctgagtaaacaagctttgactgatgaaatgcaagacacatcatggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

211

Amino Acids

24.3

Weight (kDa)

5.34

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	3 cut(s)	54, 217, 220
AclWI	GGATC	2 cut(s)	467, 547
AcsI	RAATTY	2 cut(s)	326, 430
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 498
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	555
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	6 cut(s)	40, 76, 136, 295, 584, 599
AluI	AGCT	6 cut(s)	40, 76, 136, 295, 584, 599
Alw21I	GWGCWC	2 cut(s)	491, 586
AlwI	GGATC	2 cut(s)	467, 547
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	326, 430
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	35, 579
AsuHPI	GGTGA	3 cut(s)	68, 200, 250
AsuII	TTCGAA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	491, 586
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	2 cut(s)	35, 579
BfaI	CTAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	3 cut(s)	218, 221, 468
BlpI	GCTNAGC	1 cut(s)	518
BlsI	GCNGC	3 cut(s)	219, 222, 469
Bme1390I	CCNGG	3 cut(s)	35, 557, 579
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	32, 207
BmrFI	CCNGG	3 cut(s)	35, 557, 579
BmsI	GCATC	1 cut(s)	454
Bpu1102I	GCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	478, 505
BpuMI	CCSGG	2 cut(s)	35, 579
BsaJI	CCNNGG	2 cut(s)	5, 556
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 498
Bse1I	ACTGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	5, 556
BseGI	GGATG	2 cut(s)	157, 309
BseLI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 498
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	324, 578
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	3 cut(s)	101, 146, 188
BseXI	GCAGC	1 cut(s)	454
BsiHKAI	GWGCWC	2 cut(s)	491, 586
BsiSI	CCGG	2 cut(s)	34, 578
BslI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 498
BsmI	GAATGC	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	491, 586
Bsp143I	GATC	2 cut(s)	472, 552
Bsp1720I	GCTNAGC	1 cut(s)	518
BspACI	CCGC	3 cut(s)	54, 217, 220
BspCNI	CTCAG	2 cut(s)	325, 579
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	32, 207
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	467, 547
BspT104I	TTCGAA	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	5, 556
BssMI	GATC	2 cut(s)	472, 552
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	417
BstAFI	CTTAAG	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	5 cut(s)	263, 333, 372, 518, 587
BstF5I	GGATG	2 cut(s)	157, 309
BstKTI	GATC	2 cut(s)	475, 555
BstMBI	GATC	2 cut(s)	472, 552
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	3 cut(s)	33, 555, 577
BstV1I	GCAGC	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	551
BtsCI	GGATG	2 cut(s)	157, 309
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	3 cut(s)	427, 509, 627
CviJI	RGCY	7 cut(s)	40, 76, 136, 262, 295, 584, 599
CviKI_1	RGCY	7 cut(s)	40, 76, 136, 262, 295, 584, 599
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	5 cut(s)	263, 333, 372, 518, 587
DpnI	GATC	2 cut(s)	474, 554
DpnII	GATC	2 cut(s)	472, 552
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	584
EcoRI	GAATTC	2 cut(s)	326, 430
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	3 cut(s)	430, 512, 630
FaiI	YATR	5 cut(s)	63, 428, 456, 510, 628
FatI	CATG	3 cut(s)	426, 508, 626
Fnu4HI	GCNGC	3 cut(s)	218, 221, 468
FokI	GGATG	2 cut(s)	164, 316
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	3 cut(s)	218, 221, 468
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	3 cut(s)	218, 221, 468
HapII	CCGG	2 cut(s)	34, 578
Hin1II	CATG	3 cut(s)	430, 512, 630
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	2 cut(s)	241, 438
HpaII	CCGG	2 cut(s)	34, 578
HphI	GGTGA	3 cut(s)	68, 200, 250
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	4 cut(s)	205, 357, 443, 588
Hpy188III	TCNNGA	4 cut(s)	435, 476, 495, 509
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	76, 432
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	98, 616
HpyF3I	CTNAG	5 cut(s)	263, 333, 372, 518, 587
Hsp92II	CATG	3 cut(s)	430, 512, 630
Kzo9I	GATC	2 cut(s)	472, 552
LmnI	GCTCC	3 cut(s)	37, 133, 581
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	2 cut(s)	474, 554
MboI	GATC	2 cut(s)	472, 552
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	491, 586
MluCI	AATT	3 cut(s)	24, 326, 430
MmeI	TCCRAC	3 cut(s)	129, 183, 362
Mph1103I	ATGCAT	1 cut(s)	100
MseI	TTAA	2 cut(s)	348, 534
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	34, 578
MspR9I	CCNGG	3 cut(s)	35, 557, 579
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	557
NciI	CCSGG	2 cut(s)	35, 579
NdeII	GATC	2 cut(s)	472, 552
NlaIII	CATG	3 cut(s)	430, 512, 630
NlaIV	GGNNCC	2 cut(s)	32, 207
NsiI	ATGCAT	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	241, 438
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	219, 222, 469
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	32, 207
PspPI	GGNCC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	2 cut(s)	348, 534
SatI	GCNGC	3 cut(s)	218, 221, 468
Sau3AI	GATC	2 cut(s)	472, 552
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	3 cut(s)	35, 557, 579
SduI	GDGCHC	2 cut(s)	491, 586
SfaNI	GCATC	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	114
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	3 cut(s)	347, 484, 493
SmoI	CTYRAG	3 cut(s)	347, 484, 493
Sse9I	AATT	3 cut(s)	24, 326, 430
SsiI	CCGC	3 cut(s)	54, 217, 220
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	33, 555, 577
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	24, 326, 430
TauI	GCSGC	2 cut(s)	220, 223
TfiI	GAWTC	2 cut(s)	241, 438
Tru1I	TTAA	2 cut(s)	348, 534
Tru9I	TTAA	2 cut(s)	348, 534
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	5 cut(s)	270, 323, 443, 497, 624
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	337
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	2 cut(s)	326, 430
XbaI	TCTAGA	1 cut(s)	434
XspI	CTAG	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.