Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Forward (+)

19892741 .. 19892992

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG204200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTAGTAGCGGTGAGTATGGTGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCCGAAAAAGGGAGGAGCTGAAATGGGTGTTGGATGATCATGTGGAGATAAAAGAGGAGTGGTTTGATGGTGAGAATAGGGTGTGGGACCCGACAAAGCGGCGGCGAGGGGGAGGTGATTCAGTTTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

83

Amino Acids

9.9

Weight (kDa)

5.29

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	54, 217, 220
AcuI	CTGAAG	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	40, 126, 127
AgsI	TTSAA	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	3 cut(s)	40, 76, 136
AluI	AGCT	3 cut(s)	40, 76, 136
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	68, 200, 245
AsuII	TTCGAA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	205
BccI	CCATC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	35
BisI	GCNGC	2 cut(s)	218, 221
BlsI	GCNGC	2 cut(s)	219, 222
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	3 cut(s)	32, 206, 207
BmrFI	CCNGG	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 126, 127
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	3 cut(s)	40, 126, 127
BseRI	GAGGAG	3 cut(s)	101, 146, 188
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	40, 126, 127
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	100
Bsp119I	TTCGAA	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	3 cut(s)	54, 217, 220
BspLI	GGNNCC	3 cut(s)	32, 206, 207
BspT104I	TTCGAA	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	205
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	3 cut(s)	40, 76, 136
CviKI_1	RGCY	3 cut(s)	40, 76, 136
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	63, 159
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	218, 221
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	218, 221
GluI	GCNGC	2 cut(s)	218, 221
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	3 cut(s)	68, 200, 245
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	161
KflI	GGGWCCC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	37, 133
LpnPI	CCDG	2 cut(s)	26, 47
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	91
MluCI	AATT	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	79, 96, 124, 166, 218, 224
Mph1103I	ATGCAT	1 cut(s)	100
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	3 cut(s)	32, 206, 207
NsiI	ATGCAT	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	219, 222
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	32, 206, 207
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
SatI	GCNGC	2 cut(s)	218, 221
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	4 cut(s)	42, 78, 138, 235
SfuI	TTCGAA	1 cut(s)	114
SgeI	CNNG	9 cut(s)	18, 46, 47, 53, 57, 132, 170, 220, 236
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	3 cut(s)	54, 217, 220
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	24
TauI	GCSGC	2 cut(s)	220, 223
TfiI	GAWTC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.