Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

6505770 .. 6508622

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1080500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGAAGCTCTGCAAGCTTCCCTCCCACAAGTCCCTCACATCCAATTCGAACCCGACAGTGATAAAATCAAACGCAACCTCACCAAGAAAGGTGTCCACCCAACTCGCAAGATCGTCCACACCGTCCGTAAAAAAGAAATCCAAAAACACAACCGCAAGCTCAACCGCCTCACGGAGGCGGATCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

64

Amino Acids

7.33

Weight (kDa)

10.28

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	154, 166, 179
AclWI	GGATC	2 cut(s)	176, 189
AfiI	CCNNNNNNNGG	2 cut(s)	172, 175
AluBI	AGCT	3 cut(s)	8, 17, 160
AluI	AGCT	3 cut(s)	8, 17, 160
AlwI	GGATC	2 cut(s)	176, 189
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 175
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	172, 175
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	172, 175
BsmFI	GGGAC	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	111, 181
BspACI	CCGC	3 cut(s)	154, 166, 179
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	176, 189
BspT104I	TTCGAA	1 cut(s)	48
BssMI	GATC	2 cut(s)	111, 181
Bst4CI	ACNGT	2 cut(s)	59, 124
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	15, 158
BstDEI	CTNAG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	114, 184
BstMBI	GATC	2 cut(s)	111, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	15, 158
CviJI	RGCY	3 cut(s)	8, 17, 160
CviKI_1	RGCY	3 cut(s)	8, 17, 160
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	113, 183
DpnII	GATC	2 cut(s)	111, 181
EcoNI	CCTNNNNNAGG	1 cut(s)	173
FaqI	GGGAC	1 cut(s)	17
FokI	GGATG	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	15
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	97, 118
Hpy8I	GTNNAC	2 cut(s)	97, 118
HpyCH4III	ACNGT	2 cut(s)	59, 124
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	111, 181
MalI	GATC	2 cut(s)	113, 183
MboI	GATC	2 cut(s)	111, 181
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	5 cut(s)	32, 45, 89, 169, 179
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	111, 181
NlaIV	GGNNCC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	181
Sau3AI	GATC	2 cut(s)	111, 181
SetI	ASST	5 cut(s)	10, 19, 81, 94, 162
SfuI	TTCGAA	1 cut(s)	48
SgeI	CNNG	8 cut(s)	26, 41, 65, 97, 117, 121, 169, 184
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	154, 166, 179
TaaI	ACNGT	2 cut(s)	59, 124
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	44
TscAI	CASTG	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	116, 188
TspRI	CASTG	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.