Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

73192247 .. 73195588

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATAGCTGCACCGGCCGGGCTAAGTGGAGGACGACGTGCGTGTGTTGTAGACTTCTTTGGGCCGGTCCGGTTTCTTTCCCGGTTCTTGGAGGTCCGACATCGATTCGCGCATTCGAAGTCGGGATGCAGGTGGTGGCCAAATATTATGGTAGATGGCGGTATGGAAGGTGGTGAACCGGCAGAAATTCTTTATTTTTTTTCAGGGGCCGGTTCGGTGCTCTTTCGGCCTGTTCCGGTGGTTCTCGCGCCCGGGATTCCCGGGGTCGAGGGCTTTAAGCCGTGTGTGGTGGAGCAGAAAAGGTTTCAAGCTCACAACTTTCATCCATGGAAGCTCTGCAAGGATCCCTCCCTCAAATCTCAAACCCCCAATTCGAACCAGACAGTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTACACCCAACTCCCAAAATCGTCCACACTCTCCGCAAGAAACAAATCAAGAAACACAACCGCCTCAACGAACAAGACCCACCTCTCTCCCGAGTCCCAAAGCCAAGCCCTTTCCGAAGAAACCCATTTCCAAACCCTGAAAGCCGAGTACAGAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGAGGTGAATTGACGGTAGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGAGAGCTGGCGAGTAGTAGCGGTGAGTATGGTGGAGAGAAGCAGAAGGAGGAGGAGTTGAATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

242

Amino Acids

26.63

Weight (kDa)

9.6

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	2 cut(s)	110, 248
AciI	CCGC	4 cut(s)	159, 453, 480, 681
AclWI	GGATC	2 cut(s)	338, 351
AcoI	YGGCCR	2 cut(s)	15, 137
AcsI	RAATTY	1 cut(s)	186
AfaI	GTAC	2 cut(s)	422, 569
AfiI	CCNNNNNNNGG	2 cut(s)	88, 667
AgsI	TTSAA	2 cut(s)	308, 721
AjiI	CACGTC	1 cut(s)	38
AluBI	AGCT	5 cut(s)	8, 311, 334, 576, 667
AluI	AGCT	5 cut(s)	8, 311, 334, 576, 667
Alw21I	GWGCWC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	338, 351
Ama87I	CYCGRG	3 cut(s)	251, 260, 509
AoxI	GGCC	5 cut(s)	15, 62, 137, 207, 227
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	112, 250
AspS9I	GGNCC	4 cut(s)	62, 67, 94, 207
AsuC2I	CCSGG	6 cut(s)	19, 82, 252, 253, 261, 262
AsuHPI	GGTGA	5 cut(s)	185, 399, 571, 623, 695
AsuII	TTCGAA	2 cut(s)	116, 374
AvaI	CYCGRG	3 cut(s)	251, 260, 509
AvaII	GGWCC	2 cut(s)	67, 94
BalI	TGGCCA	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	343
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	265, 572
BcnI	CCSGG	6 cut(s)	19, 82, 252, 253, 261, 262
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	6 cut(s)	19, 82, 252, 253, 261, 262
Bme18I	GGWCC	2 cut(s)	67, 94
BmeT110I	CYCGRG	3 cut(s)	251, 260, 509
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	4 cut(s)	62, 67, 94, 207
BmiI	GGNNCC	3 cut(s)	208, 345, 659
BmrFI	CCNGG	6 cut(s)	19, 82, 252, 253, 261, 262
BmsI	GCATC	2 cut(s)	116, 618
Bpu14I	TTCGAA	2 cut(s)	116, 374
BpuMI	CCSGG	6 cut(s)	19, 82, 252, 253, 261, 262
Bsa29I	ATCGAT	1 cut(s)	103
BsaJI	CCNNGG	5 cut(s)	251, 260, 261, 326, 632
BsaWI	WCCGGW	2 cut(s)	69, 235
BsaXI	ACNNNNNCTCC	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 667
Bse118I	RCCGGY	4 cut(s)	13, 64, 178, 209
BseCI	ATCGAT	1 cut(s)	103
BseDI	CCNNGG	5 cut(s)	251, 260, 261, 326, 632
BseGI	GGATG	3 cut(s)	131, 322, 633
BseLI	CCNNNNNNNGG	2 cut(s)	88, 667
BseRI	GAGGAG	2 cut(s)	725, 728
BseX3I	CGGCCG	1 cut(s)	15
Bsh1236I	CGCG	2 cut(s)	110, 248
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	5 cut(s)	17, 64, 139, 209, 229
BshVI	ATCGAT	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	3 cut(s)	251, 260, 509
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	88, 667
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	2 cut(s)	112, 727
BsnI	GGCC	5 cut(s)	17, 64, 139, 209, 229
BsoBI	CYCGRG	3 cut(s)	251, 260, 509
Bsp119I	TTCGAA	2 cut(s)	116, 374
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	343
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	4 cut(s)	159, 453, 480, 681
BspANI	GGCC	5 cut(s)	17, 64, 139, 209, 229
BspDI	ATCGAT	1 cut(s)	103
BspFNI	CGCG	2 cut(s)	110, 248
BspLI	GGNNCC	3 cut(s)	208, 345, 659
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	338, 351
BspT104I	TTCGAA	2 cut(s)	116, 374
BsrFI	RCCGGY	4 cut(s)	13, 64, 178, 209
BssAI	RCCGGY	4 cut(s)	13, 64, 178, 209
BssECI	CCNNGG	5 cut(s)	251, 260, 261, 326, 632
BssMI	GATC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	326, 632
Bst4CI	ACNGT	2 cut(s)	385, 622
BstBI	TTCGAA	2 cut(s)	116, 374
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	131, 322, 633
BstFNI	CGCG	2 cut(s)	110, 248
BstHHI	GCGC	2 cut(s)	112, 250
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 226
BstSCI	CCNGG	6 cut(s)	17, 80, 250, 251, 259, 260
BstUI	CGCG	2 cut(s)	110, 248
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	17, 64, 139, 209, 229
BsuTUI	ATCGAT	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	131, 322, 633
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	2 cut(s)	112, 250
Cfr10I	RCCGGY	4 cut(s)	13, 64, 178, 209
Cfr13I	GGNCC	4 cut(s)	62, 67, 94, 207
Cfr9I	CCCGGG	2 cut(s)	251, 260
ClaI	ATCGAT	1 cut(s)	103
CpoI	CGGWCCG	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	421, 568
CspI	CGGWCCG	1 cut(s)	67
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	2 cut(s)	421, 568
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	15, 137
EagI	CGGCCG	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	326, 632
Eco47I	GGWCC	2 cut(s)	67, 94
Eco52I	CGGCCG	1 cut(s)	15
Eco88I	CYCGRG	3 cut(s)	251, 260, 509
EcoT14I	CCWWGG	2 cut(s)	326, 632
ErhI	CCWWGG	2 cut(s)	326, 632
FaeI	CATG	1 cut(s)	330
FaiI	YATR	4 cut(s)	149, 164, 328, 690
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	138, 309, 640
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	2 cut(s)	111, 249
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	5 cut(s)	17, 64, 139, 209, 229
HhaI	GCGC	2 cut(s)	112, 250
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	2 cut(s)	110, 248
HinP1I	GCGC	2 cut(s)	110, 248
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	3 cut(s)	105, 256, 512
HphI	GGTGA	5 cut(s)	185, 399, 571, 623, 695
Hpy166II	GTNNAC	4 cut(s)	52, 176, 423, 444
Hpy188I	TCNGA	3 cut(s)	98, 535, 662
Hpy188III	TCNNGA	3 cut(s)	123, 468, 509
Hpy8I	GTNNAC	4 cut(s)	52, 176, 423, 444
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	161, 700
HpyCH4III	ACNGT	2 cut(s)	385, 622
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	11, 129, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 226
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	2 cut(s)	110, 248
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	292
LweI	GCATC	2 cut(s)	116, 618
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	548
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	139
MluCI	AATT	4 cut(s)	186, 370, 614, 651
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	121
Mox20I	TGGCCA	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	139
MseI	TTAA	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	139
MspR9I	CCNGG	6 cut(s)	19, 82, 252, 253, 261, 262
Mva1269I	GAATGC	2 cut(s)	112, 727
MvnI	CGCG	2 cut(s)	110, 248
MwoI	GCNNNNNNNGC	2 cut(s)	14, 226
NciI	CCSGG	6 cut(s)	19, 82, 252, 253, 261, 262
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	3 cut(s)	208, 345, 659
NmeAIII	GCCGAG	1 cut(s)	589
NspV	TTCGAA	2 cut(s)	116, 374
PaqCI	CACCTGC	1 cut(s)	120
PctI	GAATGC	2 cut(s)	112, 727
PfeI	GAWTC	2 cut(s)	105, 256
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PspN4I	GGNNCC	3 cut(s)	208, 345, 659
PspPI	GGNCC	4 cut(s)	62, 67, 94, 207
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	422, 569
RsaNI	GTAC	2 cut(s)	421, 568
Rsr2I	CGGWCCG	1 cut(s)	67
RsrII	CGGWCCG	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	4 cut(s)	62, 67, 94, 207
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	6 cut(s)	19, 82, 252, 253, 261, 262
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	116, 618
SfuI	TTCGAA	2 cut(s)	116, 374
SinI	GGWCC	2 cut(s)	67, 94
SmaI	CCCGGG	2 cut(s)	253, 262
Sse9I	AATT	4 cut(s)	186, 370, 614, 651
SsiI	CCGC	4 cut(s)	159, 453, 480, 681
SspI	AATATT	1 cut(s)	145
StyD4I	CCNGG	6 cut(s)	17, 80, 250, 251, 259, 260
StyI	CCWWGG	2 cut(s)	326, 632
TaaI	ACNGT	2 cut(s)	385, 622
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	4 cut(s)	103, 116, 267, 374
TasI	AATT	4 cut(s)	186, 370, 614, 651
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	105, 256
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	311
TspMI	CCCGGG	2 cut(s)	251, 260
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	67, 94
XapI	RAATTY	1 cut(s)	186
XmaI	CCCGGG	2 cut(s)	251, 260
XmiI	GTMKAC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.