Rw2G015880

Signal recognition particle receptor beta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006906
Physical Location & Seq
Forward (+)
18550944 .. 18552494
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G015880.1

Sequence Viewer

Length: 432 bp
ATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTAGTAGCGGTGAGTATGGTGGAGAGAAGCTGAAGAAGGAGGAGTTTAATGCATTGAGGGAAATGCTTAGTGGTACGGAGTTTCACAATGAGGGACTGGAAGTTTCGAGGATGATGAAGCAGTCAGGTTTGGAGTTCACTGAGGGTCAGGTTCTTAAGGTTCTGAATAGGCATTGTCTGTTGTGGAATGGGTTTATAAGGACAGGGGCAATAAACACTGCAAAAGCAGATCCTGATAACTTGAGCACCTCAAGAGGGGAACTTCATGATTTGCTTAGCAAATCCTCACTAAATGGTATCCCATTGCTGATCCTGGGTAACAAGATTGATAAACCGGGAGCTCTGAGTAAACAAGCTTTACTGATAGAGAAGTATGTTGCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf PPR

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

6.84

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 91 - 135 1.2e-06 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AciI CCGC 1 cut(s) 54
AclWI GGATC 2 cut(s) 269, 349
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 40, 300
AflII CTTAAG 1 cut(s) 200
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 4 cut(s) 40, 76, 386, 401
AluI AGCT 4 cut(s) 40, 76, 386, 401
Alw21I GWGCWC 2 cut(s) 293, 388
AlwI GGATC 2 cut(s) 269, 349
AlwNI CAGNNNCTG 1 cut(s) 278
AsuC2I CCSGG 2 cut(s) 35, 381
AsuHPI GGTGA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 293, 388
BciT130I CCWGG 1 cut(s) 359
BciVI GTATCC 1 cut(s) 353
BcnI CCSGG 2 cut(s) 35, 381
BfrI CTTAAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 320
Bme1390I CCNGG 3 cut(s) 35, 359, 381
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 3 cut(s) 35, 359, 381
Bpu1102I GCTNAGC 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 280, 307
BpuMI CCSGG 2 cut(s) 35, 381
BsaJI CCNNGG 2 cut(s) 5, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 300
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 5, 358
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 40, 300
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 177, 380
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 293, 388
BsiSI CCGG 2 cut(s) 34, 380
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 40, 300
BsmFI GGGAC 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 293, 388
Bsp143I GATC 2 cut(s) 274, 354
Bsp1720I GCTNAGC 1 cut(s) 320
BspACI CCGC 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 178, 381
BspHI TCATGA 2 cut(s) 310, 428
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 2 cut(s) 269, 349
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 5, 358
BssMI GATC 2 cut(s) 274, 354
BssT1I CCWWGG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 4 cut(s) 113, 186, 320, 389
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 277, 357
BstMBI GATC 2 cut(s) 274, 354
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 33, 357, 379
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuI GTATCC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 183, 261
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 2 cut(s) 310, 428
Csp6I GTAC 1 cut(s) 120
CviAII CATG 2 cut(s) 311, 429
CviJI RGCY 4 cut(s) 40, 76, 386, 401
CviKI_1 RGCY 4 cut(s) 40, 76, 386, 401
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 4 cut(s) 113, 186, 320, 389
DpnI GATC 2 cut(s) 276, 356
DpnII GATC 2 cut(s) 274, 354
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 5
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 314, 432
FaiI YATR 5 cut(s) 63, 242, 312, 420, 430
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 310, 428
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 388
HapII CCGG 2 cut(s) 34, 380
Hin1II CATG 2 cut(s) 314, 432
HindIII AAGCTT 1 cut(s) 399
HpaII CCGG 2 cut(s) 34, 380
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 183, 395
Hpy188I TCNGA 2 cut(s) 210, 390
Hpy188III TCNNGA 4 cut(s) 278, 297, 311, 429
Hpy8I GTNNAC 2 cut(s) 183, 395
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 98, 266
HpyF3I CTNAG 4 cut(s) 113, 186, 320, 389
Hsp92II CATG 2 cut(s) 314, 432
Kzo9I GATC 2 cut(s) 274, 354
LmnI GCTCC 2 cut(s) 37, 383
MaeIII GTNAC 1 cut(s) 362
MalI GATC 2 cut(s) 276, 356
MboI GATC 2 cut(s) 274, 354
MboII GAAGA 1 cut(s) 91
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 2 cut(s) 293, 388
MluCI AATT 1 cut(s) 24
MnlI CCTC 8 cut(s) 79, 96, 130, 147, 181, 293, 304, 340
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 2 cut(s) 93, 201
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 2 cut(s) 34, 380
MspR9I CCNGG 3 cut(s) 35, 359, 381
MvaI CCWGG 1 cut(s) 359
NciI CCSGG 2 cut(s) 35, 381
NdeII GATC 2 cut(s) 274, 354
NlaIII CATG 2 cut(s) 314, 432
NlaIV GGNNCC 1 cut(s) 32
NsiI ATGCAT 1 cut(s) 100
PagI TCATGA 2 cut(s) 310, 428
PfoI TCCNGGA 1 cut(s) 33
PsiI TTATAA 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 2 cut(s) 93, 201
Sau3AI GATC 2 cut(s) 274, 354
ScrFI CCNGG 3 cut(s) 35, 359, 381
SduI GDGCHC 2 cut(s) 293, 388
SetI ASST 8 cut(s) 42, 78, 175, 198, 207, 296, 388, 403
SmlI CTYRAG 3 cut(s) 200, 286, 295
SmoI CTYRAG 3 cut(s) 200, 286, 295
Sse9I AATT 1 cut(s) 24
SsiI CCGC 1 cut(s) 54
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 3 cut(s) 33, 357, 379
StyI CCWWGG 1 cut(s) 5
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 24
Tru1I TTAA 2 cut(s) 93, 201
Tru9I TTAA 2 cut(s) 93, 201
TscAI CASTG 2 cut(s) 190, 268
TspDTI ATGAA 3 cut(s) 176, 299, 417
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 2 cut(s) 190, 268
Vha464I CTTAAG 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.