Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002530.1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

90175 .. 90474

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002530.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggaagctctgcaaggagccctccctcaaatcccaaacccccaattccaaacaaacactgataaaatcaaacgcaacctcaccaacaaaggcgtacacccaactcccaaaatcgtccacactctccgcaagaaacaaatcgagaaacacaaccgcaaactcaaccgcctcgacgaacaagacccacctctctccgaatcccaaagccaagccctttccgaagaaacccatttccaaaccctggaagccgagtacagaagcttcaccagagccgtgaaatcaaaagaatggtggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

99

Amino Acids

11.64

Weight (kDa)

9.75

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AciI	CCGC	3 cut(s)	127, 154, 166
AfaI	GTAC	2 cut(s)	96, 254
AfiI	CCNNNNNNNGG	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	8, 261
AluI	AGCT	2 cut(s)	8, 261
AsuHPI	GGTGA	2 cut(s)	73, 256
BanII	GRGCYC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	22
BspACI	CCGC	3 cut(s)	127, 154, 166
BspLI	GGNNCC	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	95, 253
CviJI	RGCY	7 cut(s)	8, 20, 207, 212, 248, 261, 272
CviKI_1	RGCY	7 cut(s)	8, 20, 207, 212, 248, 261, 272
CviQI	GTAC	2 cut(s)	95, 253
Eco24I	GRGCYC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	2 cut(s)	73, 256
Hpy166II	GTNNAC	2 cut(s)	97, 118
Hpy188I	TCNGA	2 cut(s)	196, 220
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	97, 118
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	3 cut(s)	227, 254, 280
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	5 cut(s)	32, 36, 89, 179, 198
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	19
NmeAIII	GCCGAG	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	96, 254
RsaNI	GTAC	2 cut(s)	95, 253
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	4 cut(s)	10, 81, 190, 263
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	127, 154, 166
StyD4I	CCNGG	1 cut(s)	240
TaqI	TCGA	2 cut(s)	141, 171
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.