Rmu_sc0007406.1_g000026

Signal recognition particle receptor beta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007406.1
OG0006906
Physical Location & Seq
Reverse (-)
83873 .. 86563
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007406.1_g000026.1.cds

Sequence Viewer

Length: 558 bp
atgtgcttgaatcaagctgaggagaagttcaactcgtgtttgctgtcaaggtcatcaattgctgcaatggctctcaactcagaagaagaaacccatttccaaatcctgaaagccgagtacagaagcttcaccagagccgtgaaatcaaagaatggtggcggtgaattgacggttgggatgccttgggagagagtggagagaattgggttccgggagctggcgagtagtagcggtgagtatggtggagagaagctgaagaaggaggagttgaatgcattgagggaaatgttcgaaacccgaaaaagggaggagctgaaatgggtgttggatgatcatgtggagataaaagaggagtggcttagtggaacagagtttgcaatgagggactggaagctttcgaggatgatgaagcagtcaggtttggagttcactgagggtcaggttctgaatggactttgctatgttgttgatgctgctgatcctgataacttgagcacctcaagagggaacttcatgatttgcttagcaaatcctcacttaatggtatcccatcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf PPR

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

5.52

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 159, 231
AclWI GGATC 1 cut(s) 473
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 4 cut(s) 217, 303, 304, 504
AgsI TTSAA 3 cut(s) 10, 31, 271
AjuI GAANNNNNNNTTGG 4 cut(s) 156, 188, 308, 340
AluBI AGCT 6 cut(s) 17, 126, 217, 253, 313, 394
AluI AGCT 6 cut(s) 17, 126, 217, 253, 313, 394
Alw21I GWGCWC 1 cut(s) 497
AlwI GGATC 1 cut(s) 473
AlwNI CAGNNNCTG 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 62, 473
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 121, 173, 245
AsuII TTCGAA 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BauI CACGAG 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 497
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 49, 460
BceAI ACGGC 1 cut(s) 122
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 2 cut(s) 63, 474
BlpI GCTNAGC 1 cut(s) 523
BlsI GCNGC 2 cut(s) 64, 475
Bme1390I CCNGG 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 2 cut(s) 168, 460
Bpu10I CCTNAGC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 523
Bpu14I TTCGAA 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 484, 511
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 303, 304, 504
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 2 cut(s) 72, 384
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 3 cut(s) 183, 334, 408
BseLI CCNNNNNNNGG 4 cut(s) 217, 303, 304, 504
BseMI GCAATG 2 cut(s) 72, 384
BseMII CTCAG 3 cut(s) 9, 93, 423
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 4 cut(s) 35, 278, 323, 365
BseXI GCAGC 2 cut(s) 49, 460
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 4 cut(s) 217, 303, 304, 504
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 2 cut(s) 331, 478
Bsp1720I GCTNAGC 1 cut(s) 523
BspACI CCGC 2 cut(s) 159, 231
BspCNI CTCAG 3 cut(s) 10, 92, 424
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 473
BspT104I TTCGAA 1 cut(s) 291
BsrDI GCAATG 2 cut(s) 72, 384
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 2 cut(s) 331, 478
BssSI CACGAG 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 5 cut(s) 18, 79, 359, 432, 523
BstF5I GGATG 3 cut(s) 183, 334, 408
BstKTI GATC 2 cut(s) 334, 481
BstMBI GATC 2 cut(s) 331, 478
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 49, 460
BsuI GTATCC 1 cut(s) 556
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 3 cut(s) 183, 334, 408
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 445
CciI TCATGA 1 cut(s) 513
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 335, 514
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 5 cut(s) 18, 79, 359, 432, 523
DpnI GATC 2 cut(s) 333, 480
DpnII GATC 2 cut(s) 331, 478
Eco130I CCWWGG 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 2 cut(s) 338, 517
FaiI YATR 4 cut(s) 240, 336, 462, 515
FaqI GGGAC 1 cut(s) 398
FatI CATG 2 cut(s) 334, 513
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 63, 474
FokI GGATG 3 cut(s) 190, 341, 415
Fsp4HI GCNGC 2 cut(s) 63, 474
GluI GCNGC 2 cut(s) 63, 474
HapII CCGG 1 cut(s) 211
Hin1II CATG 2 cut(s) 338, 517
HindIII AAGCTT 2 cut(s) 124, 392
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 211
HphI GGTGA 3 cut(s) 121, 173, 245
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 2 cut(s) 82, 447
Hpy188III TCNNGA 4 cut(s) 106, 482, 501, 514
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 65, 275, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 5 cut(s) 18, 79, 359, 432, 523
Hsp92II CATG 2 cut(s) 338, 517
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 331, 478
LmnI GCTCC 2 cut(s) 214, 310
LpnPI CCDG 8 cut(s) 119, 145, 203, 224, 373, 402, 425, 495
Lsp1109I GCAGC 2 cut(s) 49, 460
LweI GCATC 2 cut(s) 168, 460
MalI GATC 2 cut(s) 333, 480
MboI GATC 2 cut(s) 331, 478
MboII GAAGA 3 cut(s) 95, 98, 268
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 3 cut(s) 57, 164, 201
MmeI TCCRAC 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 1 cut(s) 539
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 331, 478
NlaIII CATG 2 cut(s) 338, 517
NlaIV GGNNCC 1 cut(s) 209
NmeAIII GCCGAG 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 277
NspV TTCGAA 1 cut(s) 291
PagI TCATGA 1 cut(s) 513
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 2 cut(s) 64, 475
PspN4I GGNNCC 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 445
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 2 cut(s) 63, 474
Sau3AI GATC 2 cut(s) 331, 478
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 2 cut(s) 168, 460
SfuI TTCGAA 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 490, 499
SmoI CTYRAG 2 cut(s) 490, 499
Sse9I AATT 3 cut(s) 57, 164, 201
SsiI CCGC 2 cut(s) 159, 231
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 291, 398
TasI AATT 3 cut(s) 57, 164, 201
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 1 cut(s) 436
TseI GCWGC 2 cut(s) 62, 473
TspDTI ATGAA 2 cut(s) 422, 502
TspRI CASTG 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.