Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007406.1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

56469 .. 58018

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007406.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgccttgggagagactggagagaattgggttccgggagctggcgagtagtagcggtgagtatggtggagagaagctgaagaaggaggagtttaatgcattgagggaaatgttcgaaacccgaaaaagggaggagctgaaatgggtgttggatgatgatgtggagataaaagaggagtggtttaatggagagaatagggtgtcggacccggcgaagcggaggcgtggcgagggggagtggtacggagtttgcaatgagggactggaagtttcgaggatgatgaagcagtcaggtttggagttcactgagggtcaggttcttaaggttctgaataggcattgtctgttgtggaatgggtttataaggacaggggcaataaacactgcaaaagcagatcctgataacttgagcacctcaagaggggaacttcatgatttgcttagcaaatcctcactaaatggtatcccattgctgatcctgggtaacaagattgataaaccgggagctctgagtaaacaagctttactgatagagaagtatgttgcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

183

Amino Acids

20.89

Weight (kDa)

5.88

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AciI	CCGC	2 cut(s)	54, 217
AclWI	GGATC	2 cut(s)	389, 469
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 420
AflII	CTTAAG	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	477
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	40, 76, 136, 506, 521
AluI	AGCT	5 cut(s)	40, 76, 136, 506, 521
Alw21I	GWGCWC	2 cut(s)	413, 508
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	2 cut(s)	389, 469
AlwNI	CAGNNNCTG	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	3 cut(s)	35, 209, 501
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	508
Bbv12I	GWGCWC	2 cut(s)	413, 508
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	1 cut(s)	473
BcnI	CCSGG	3 cut(s)	35, 209, 501
BcoDI	GTCTC	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	473
BlpI	GCTNAGC	1 cut(s)	440
Bme1390I	CCNGG	4 cut(s)	35, 209, 479, 501
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	32, 207
BmrFI	CCNGG	4 cut(s)	35, 209, 479, 501
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	400, 427
BpuMI	CCSGG	3 cut(s)	35, 209, 501
BsaJI	CCNNGG	2 cut(s)	5, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 420
Bse1I	ACTGG	2 cut(s)	21, 267
Bse3DI	GCAATG	2 cut(s)	259, 467
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	5, 478
BseGI	GGATG	2 cut(s)	157, 282
BseLI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 420
BseMI	GCAATG	2 cut(s)	259, 467
BseMII	CTCAG	2 cut(s)	297, 500
BseNI	ACTGG	2 cut(s)	21, 267
BseRI	GAGGAG	3 cut(s)	101, 146, 188
BsiHKAI	GWGCWC	2 cut(s)	413, 508
BsiSI	CCGG	3 cut(s)	34, 209, 500
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	40, 126, 127, 420
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	413, 508
Bsp143I	GATC	2 cut(s)	394, 474
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	2 cut(s)	54, 217
BspCNI	CTCAG	2 cut(s)	298, 501
BspHI	TCATGA	2 cut(s)	430, 548
BspLI	GGNNCC	2 cut(s)	32, 207
BspPI	GGATC	2 cut(s)	389, 469
BspT104I	TTCGAA	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	259, 467
BsrI	ACTGG	2 cut(s)	21, 267
BssECI	CCNNGG	2 cut(s)	5, 478
BssMI	GATC	2 cut(s)	394, 474
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	479
BstAFI	CTTAAG	1 cut(s)	320
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	306, 440, 509
BstF5I	GGATG	2 cut(s)	157, 282
BstKTI	GATC	2 cut(s)	397, 477
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	394, 474
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	4 cut(s)	33, 207, 477, 499
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	473
BtsCI	GGATG	2 cut(s)	157, 282
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	303, 381
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	2 cut(s)	430, 548
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	431, 549
CviJI	RGCY	5 cut(s)	40, 76, 136, 506, 521
CviKI_1	RGCY	5 cut(s)	40, 76, 136, 506, 521
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	306, 440, 509
DpnI	GATC	2 cut(s)	396, 476
DpnII	GATC	2 cut(s)	394, 474
Ecl136II	GAGCTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	434, 552
FaiI	YATR	5 cut(s)	63, 362, 432, 540, 550
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	430, 548
FokI	GGATG	2 cut(s)	164, 289
FriOI	GRGCYC	1 cut(s)	508
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	3 cut(s)	34, 209, 500
Hin1II	CATG	2 cut(s)	434, 552
HindIII	AAGCTT	1 cut(s)	519
HpaII	CCGG	3 cut(s)	34, 209, 500
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	303, 515
Hpy188I	TCNGA	3 cut(s)	205, 330, 510
Hpy188III	TCNNGA	4 cut(s)	398, 417, 431, 549
Hpy8I	GTNNAC	2 cut(s)	303, 515
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	3 cut(s)	98, 252, 386
HpyF3I	CTNAG	3 cut(s)	306, 440, 509
Hsp92II	CATG	2 cut(s)	434, 552
Kzo9I	GATC	2 cut(s)	394, 474
LmnI	GCTCC	3 cut(s)	37, 133, 503
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	396, 476
MboI	GATC	2 cut(s)	394, 474
MboII	GAAGA	1 cut(s)	91
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	413, 508
MluCI	AATT	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	129, 183
Mph1103I	ATGCAT	1 cut(s)	100
MseI	TTAA	3 cut(s)	93, 183, 321
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	3 cut(s)	34, 209, 500
MspR9I	CCNGG	4 cut(s)	35, 209, 479, 501
MvaI	CCWGG	1 cut(s)	479
NciI	CCSGG	3 cut(s)	35, 209, 501
NdeII	GATC	2 cut(s)	394, 474
NlaIII	CATG	2 cut(s)	434, 552
NlaIV	GGNNCC	2 cut(s)	32, 207
NsiI	ATGCAT	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	2 cut(s)	430, 548
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	32, 207
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	508
SaqAI	TTAA	3 cut(s)	93, 183, 321
Sau3AI	GATC	2 cut(s)	394, 474
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	4 cut(s)	35, 209, 479, 501
SduI	GDGCHC	2 cut(s)	413, 508
SetI	ASST	9 cut(s)	42, 78, 138, 295, 318, 327, 416, 508, 523
SfuI	TTCGAA	1 cut(s)	114
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	3 cut(s)	320, 406, 415
SmoI	CTYRAG	3 cut(s)	320, 406, 415
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	54, 217
SstI	GAGCTC	1 cut(s)	508
StyD4I	CCNGG	4 cut(s)	33, 207, 477, 499
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	2 cut(s)	114, 272
TasI	AATT	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	93, 183, 321
Tru9I	TTAA	3 cut(s)	93, 183, 321
TscAI	CASTG	2 cut(s)	310, 388
TspDTI	ATGAA	3 cut(s)	296, 419, 537
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	310, 388
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.