Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014959.1

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Forward (+)

1893 .. 2222

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ctgataaaatcaaacacaacctcgatcaccaacaaaggtgtgcacccaactcccaaaatcgtctacactctcagcaagaaagaaatccagaaacacaatcgcaaactcaaccgcctcaatgaacaagacccacctctctccgagtcccaaagccaagccttttccaaagaaatgcatttccaaaccctcaaagccgagtacagaggcatcaccagagccgtgaaatcaaagaatggtggtggggaattgacgattgggatgccttgggagagagtggagagaattgggttctgggagctggcgagtagtagcggggagtatagggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

109

Amino Acids

12.42

Weight (kDa)

9.87

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	2 cut(s)	112, 312
AfaI	GTAC	1 cut(s)	200
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	19, 202
BaeGI	GKGCMC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BceAI	ACGGC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BmsI	GCATC	2 cut(s)	216, 249
BsaJI	CCNNGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	112, 312
BspCNI	CTCAG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	5 cut(s)	153, 158, 194, 218, 298
CviKI_1	RGCY	5 cut(s)	153, 158, 194, 218, 298
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	263
FaiI	YATR	1 cut(s)	321
FaqI	GGGAC	1 cut(s)	130
FauI	CCCGC	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	1 cut(s)	271
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	2 cut(s)	19, 202
Hpy166II	GTNNAC	2 cut(s)	43, 64
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	43, 64
HpyCH4V	TGCA	2 cut(s)	43, 175
HpyF3I	CTNAG	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	101, 226, 277, 284
LweI	GCATC	2 cut(s)	216, 249
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	245, 282
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	31, 125, 144, 197, 197
Mph1103I	ATGCAT	1 cut(s)	177
NdeII	GATC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	177
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	23, 40, 136, 300
SfaNI	GCATC	2 cut(s)	216, 249
Sse9I	AATT	2 cut(s)	245, 282
SsiI	CCGC	2 cut(s)	112, 312
StyI	CCWWGG	1 cut(s)	263
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	245, 282
TatI	WGTACW	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	135
VneI	GTGCAC	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.