Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Reverse (-)

73100791 .. 73102926

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAAGCTCTGCAAGGAGCCCTCCCTCAAATCCCAAACCCCCAATTCGAACCCAACACTGATAAAATCAAACGTAACCTCACCAACAAAGGCGTACACCCAACTCCCAAAATTGTCCACACTCTCCGCAAGAAAGAAATCCAGAAACACAACCGCAACCTCAACCGCCTCAACGAACAAGACCCACCACTCTACGAGTCCCAAAGCCAAGCCCTTTCCGAAGAAACCCATTTCCAAACCCTCAAAGCCGAGTACAGAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGAGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAATAGTAGCGGTGAGTATGGTGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCCGAAAAAGGGAGGAGCTGAAATTGGTGTTGGATGATGATGTGGAGATGAAAGAGGAGTGGTTTGATGGTGAGAATAGGGTGTGGGACCCGACGAAGCGGCGGCGCGGCGAGGGGGAGGTGATTCAGTTTCTTGTTGAGAGGCTTAGTGGTACTGAGTTTACAATGAGGGACTGGAAGCTTTCGAGGATGATGAAGCAGTCAGGTTTGGAGTTCACTGAGGGTCAGGTTTTGAAGATTTTGAATGGGCTTGGTGCTAAGAAATGTTGGAAGCAGGCATTGTCTGTGGTGGAATGGGTTTATAAGGAGTTAAGGACAGGGGCAATAAACATTGCAAAAGCAGGCAAGTTTAATGGCACCTCAAGAGGGGAACTTCATGATTTGCTTGGCAAATCCTCACTTAATGGTATCCCATTGCTGATCCTGGGTAACAAGATTGATAAACCGGGAGCTCTGAGTAAACAAGCTTTGACTGATGAAATGGGACTCAAGTCAATTCCTGATAGAGAATTATGTTGCTTCATGATCTCATGCAAGAACTCAACCAACATAGACTCAGTTATTGATTGGCTTGTAAAGCATTCCAAATCAAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

342

Amino Acids

39.07

Weight (kDa)

9.13

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	263 - 336	6.2e-12	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	785
AccII	CGCG	1 cut(s)	537
AciI	CCGC	7 cut(s)	127, 154, 166, 366, 529, 532, 537
AclWI	GGATC	1 cut(s)	844
AcuI	CTGAAG	1 cut(s)	410
AfaI	GTAC	3 cut(s)	96, 254, 583
AfiI	CCNNNNNNNGG	4 cut(s)	352, 438, 439, 795
AgsI	TTSAA	3 cut(s)	406, 664, 673
AjnI	CCWGG	1 cut(s)	852
AjuI	GAANNNNNNNTTGG	4 cut(s)	291, 323, 443, 475
AluBI	AGCT	8 cut(s)	8, 261, 352, 388, 448, 610, 881, 896
AluI	AGCT	8 cut(s)	8, 261, 352, 388, 448, 610, 881, 896
Alw21I	GWGCWC	1 cut(s)	883
AlwI	GGATC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	517
AsuC2I	CCSGG	2 cut(s)	347, 876
AsuHPI	GGTGA	6 cut(s)	73, 256, 308, 380, 512, 562
AsuII	TTCGAA	2 cut(s)	48, 426
AvaII	GGWCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	2 cut(s)	22, 883
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	1 cut(s)	883
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	854
BciVI	GTATCC	1 cut(s)	848
BcnI	CCSGG	2 cut(s)	347, 876
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	3 cut(s)	530, 533, 538
BlsI	GCNGC	3 cut(s)	531, 534, 539
Bme1390I	CCNGG	3 cut(s)	347, 854, 876
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	5 cut(s)	19, 344, 518, 519, 787
BmrFI	CCNGG	3 cut(s)	347, 854, 876
BmsI	GCATC	1 cut(s)	303
BoxI	GACNNNNGTC	1 cut(s)	919
Bpu14I	TTCGAA	2 cut(s)	48, 426
BpuEI	CTTGAG	2 cut(s)	775, 902
BpuMI	CCSGG	2 cut(s)	347, 876
BsaJI	CCNNGG	2 cut(s)	317, 853
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 438, 439, 795
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	2 cut(s)	759, 842
BseBI	CCWGG	1 cut(s)	854
BseDI	CCNNGG	2 cut(s)	317, 853
BseGI	GGATG	3 cut(s)	318, 469, 624
BseLI	CCNNNNNNNGG	4 cut(s)	352, 438, 439, 795
BseMI	GCAATG	2 cut(s)	759, 842
BseMII	CTCAG	4 cut(s)	576, 639, 875, 999
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	3 cut(s)	413, 458, 500
Bsh1236I	CGCG	1 cut(s)	537
BshNI	GGYRCC	1 cut(s)	785
BsiHKAI	GWGCWC	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	346, 875
BslFI	GGGAC	4 cut(s)	184, 530, 614, 927
BslI	CCNNNNNNNGG	4 cut(s)	352, 438, 439, 795
BsmFI	GGGAC	4 cut(s)	184, 530, 614, 927
BsmI	GAATGC	2 cut(s)	412, 1009
Bsp119I	TTCGAA	2 cut(s)	48, 426
Bsp1286I	GDGCHC	2 cut(s)	22, 883
Bsp143I	GATC	2 cut(s)	849, 954
BspACI	CCGC	7 cut(s)	127, 154, 166, 366, 529, 532, 537
BspCNI	CTCAG	4 cut(s)	577, 640, 876, 998
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	2 cut(s)	805, 951
BspLI	GGNNCC	5 cut(s)	19, 344, 518, 519, 787
BspPI	GGATC	1 cut(s)	844
BspT104I	TTCGAA	2 cut(s)	48, 426
BspT107I	GGYRCC	1 cut(s)	785
BsrDI	GCAATG	2 cut(s)	759, 842
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	2 cut(s)	317, 853
BssMI	GATC	2 cut(s)	849, 954
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	1 cut(s)	307
BstBI	TTCGAA	2 cut(s)	48, 426
BstC8I	GCNNGC	3 cut(s)	354, 705, 772
BstDEI	CTNAG	6 cut(s)	575, 585, 648, 687, 884, 985
BstF5I	GGATG	3 cut(s)	318, 469, 624
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	2 cut(s)	852, 957
BstMBI	GATC	2 cut(s)	849, 954
BstMWI	GCNNNNNNNGC	1 cut(s)	1006
BstNI	CCWGG	1 cut(s)	854
BstPAI	GACNNNNGTC	1 cut(s)	919
BstSCI	CCNGG	3 cut(s)	345, 852, 874
BstUI	CGCG	1 cut(s)	537
BsuI	GTATCC	1 cut(s)	848
BtsCI	GGATG	3 cut(s)	318, 469, 624
BtsIMutI	CAGTG	3 cut(s)	57, 645, 1024
Cac8I	GCNNGC	3 cut(s)	354, 705, 772
CciI	TCATGA	2 cut(s)	805, 951
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	95, 253, 582
CviAII	CATG	3 cut(s)	806, 952, 960
CviQI	GTAC	3 cut(s)	95, 253, 582
DdeI	CTNAG	6 cut(s)	575, 585, 648, 687, 884, 985
DpnI	GATC	2 cut(s)	851, 956
DpnII	GATC	2 cut(s)	849, 954
Ecl136II	GAGCTC	1 cut(s)	881
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	22, 883
Eco47I	GGWCC	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	881
Eco57I	CTGAAG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	852
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	2 cut(s)	22, 883
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	3 cut(s)	809, 955, 963
FaiI	YATR	7 cut(s)	375, 732, 807, 943, 953, 961, 980
FaqI	GGGAC	4 cut(s)	184, 530, 614, 927
FatI	CATG	3 cut(s)	805, 951, 959
Fnu4HI	GCNGC	3 cut(s)	530, 533, 538
FokI	GGATG	3 cut(s)	325, 476, 631
FriOI	GRGCYC	2 cut(s)	22, 883
Fsp4HI	GCNGC	3 cut(s)	530, 533, 538
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	3 cut(s)	530, 533, 538
HapII	CCGG	2 cut(s)	346, 875
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	3 cut(s)	809, 955, 963
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HindIII	AAGCTT	3 cut(s)	259, 608, 894
HinfI	GANTC	4 cut(s)	197, 553, 915, 983
HpaII	CCGG	2 cut(s)	346, 875
HphI	GGTGA	6 cut(s)	73, 256, 308, 380, 512, 562
Hpy166II	GTNNAC	5 cut(s)	97, 118, 591, 645, 890
Hpy188I	TCNGA	2 cut(s)	220, 885
Hpy188III	TCNNGA	5 cut(s)	142, 792, 806, 929, 952
Hpy8I	GTNNAC	5 cut(s)	97, 118, 591, 645, 890
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	13, 410, 764, 963
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1006
HpyF3I	CTNAG	6 cut(s)	575, 585, 648, 687, 884, 985
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	3 cut(s)	809, 955, 963
HspAI	GCGC	1 cut(s)	535
KflI	GGGWCCC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	849, 954
LmnI	GCTCC	4 cut(s)	17, 349, 445, 878
LweI	GCATC	1 cut(s)	303
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	2 cut(s)	74, 857
MalI	GATC	2 cut(s)	851, 956
MboI	GATC	2 cut(s)	849, 954
MboII	GAAGA	3 cut(s)	233, 403, 676
MhlI	GDGCHC	2 cut(s)	22, 883
MluCI	AATT	7 cut(s)	44, 111, 299, 336, 452, 924, 938
MlyI	GAGTC	3 cut(s)	206, 909, 977
MmeI	TCCRAC	2 cut(s)	441, 677
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	3 cut(s)	740, 780, 831
MspI	CCGG	2 cut(s)	346, 875
MspR9I	CCNGG	3 cut(s)	347, 854, 876
Mva1269I	GAATGC	2 cut(s)	412, 1009
MvaI	CCWGG	1 cut(s)	854
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	1006
NciI	CCSGG	2 cut(s)	347, 876
NdeII	GATC	2 cut(s)	849, 954
NlaIII	CATG	3 cut(s)	809, 955, 963
NlaIV	GGNNCC	5 cut(s)	19, 344, 518, 519, 787
NmeAIII	GCCGAG	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	412
NspV	TTCGAA	2 cut(s)	48, 426
PagI	TCATGA	2 cut(s)	805, 951
PctI	GAATGC	2 cut(s)	412, 1009
PfeI	GAWTC	1 cut(s)	553
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	531, 534, 539
PleI	GAGTC	3 cut(s)	205, 909, 977
PpsI	GAGTC	3 cut(s)	205, 909, 977
PpuMI	RGGWCCY	1 cut(s)	517
PshAI	GACNNNNGTC	1 cut(s)	919
PsiI	TTATAA	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	883
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	5 cut(s)	19, 344, 518, 519, 787
PspPI	GGNCC	1 cut(s)	517
PspPPI	RGGWCCY	1 cut(s)	517
RsaI	GTAC	3 cut(s)	96, 254, 583
RsaNI	GTAC	3 cut(s)	95, 253, 582
SacI	GAGCTC	1 cut(s)	883
SaqAI	TTAA	3 cut(s)	740, 780, 831
SatI	GCNGC	3 cut(s)	530, 533, 538
Sau3AI	GATC	2 cut(s)	849, 954
Sau96I	GGNCC	1 cut(s)	517
SchI	GAGTC	3 cut(s)	206, 909, 977
ScrFI	CCNGG	3 cut(s)	347, 854, 876
SduI	GDGCHC	2 cut(s)	22, 883
SfaNI	GCATC	1 cut(s)	303
SfuI	TTCGAA	2 cut(s)	48, 426
SinI	GGWCC	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	790, 917
SmoI	CTYRAG	2 cut(s)	790, 917
Sse9I	AATT	7 cut(s)	44, 111, 299, 336, 452, 924, 938
SsiI	CCGC	7 cut(s)	127, 154, 166, 366, 529, 532, 537
SstI	GAGCTC	1 cut(s)	883
StyD4I	CCNGG	3 cut(s)	345, 852, 874
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	3 cut(s)	48, 426, 614
TasI	AATT	7 cut(s)	44, 111, 299, 336, 452, 924, 938
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	3 cut(s)	532, 535, 540
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	740, 780, 831
Tru9I	TTAA	3 cut(s)	740, 780, 831
TscAI	CASTG	2 cut(s)	64, 652
TspDTI	ATGAA	5 cut(s)	494, 638, 794, 921, 940
TspRI	CASTG	2 cut(s)	64, 652
VpaK11BI	GGWCC	1 cut(s)	517
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.