Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006906

Physical Location & Seq

Genomic Coordinates Forward (+)

19892431 .. 19892727

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG204100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAAGCTCTGCAAGGATCCCTCCCTCAAATCTCAGACCACCAATTCGGACCAGACAGTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTACACCCAACTCCCAAAATCGTCCACACTCTCCGCAAGAAACAAATCCAGAAACACCCGCAAACTCAACCGCGTCAACGAACAAGACCCACCTCTCTCCGAGTCCCAAAGCCAAGCCCTTTCCGAAGAAACCCATTTCCAAACCCTGAAAGCCGAGTACAAAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

98

Amino Acids

11.61

Weight (kDa)

11.62

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17890
malus_domestica	MD03G1080500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0108141 RchiOBHm_Chr2g0108171
rosa_laevigata	RLG00000017641 RLG00000017644
rosa_multiflora	Rmu_sc0002530.1_g000014 Rmu_sc0002530.1_g000016 Rmu_sc0002530.1_g000017 Rmu_sc0007406.1_g000015 Rmu_sc0007406.1_g000017 Rmu_sc0007406.1_g000018 Rmu_sc0007406.1_g000026 Rmu_sc0014959.1_g000001
rosa_roxburghii	Rroxscaffold_2G00135520 Rroxscaffold_2G00135610 Rroxscaffold_2G00135620
rosa_rugosa	Rorug02G0150800
rosa_samantha	Rh2AG199700 Rh2BG212400 Rh2CG204100 Rh2CG204200 Rh2CG204300 Rh2CG204400
rosa_wichuraiana	Rw2G015860 Rw2G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AciI	CCGC	4 cut(s)	127, 152, 164, 292
AclWI	GGATC	2 cut(s)	12, 25
AfaI	GTAC	2 cut(s)	96, 252
AluBI	AGCT	2 cut(s)	8, 259
AluI	AGCT	2 cut(s)	8, 259
AlwI	GGATC	2 cut(s)	12, 25
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	73, 254
AvaII	GGWCC	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	243, 275
BceAI	ACGGC	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	4 cut(s)	127, 152, 164, 292
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	12, 25
BssMI	GATC	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstUI	CGCG	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	95, 251
CviJI	RGCY	6 cut(s)	8, 205, 210, 246, 259, 270
CviKI_1	RGCY	6 cut(s)	8, 205, 210, 246, 259, 270
CviQI	GTAC	2 cut(s)	95, 251
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	182
FauI	CCCGC	1 cut(s)	159
HgaI	GACGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	2 cut(s)	73, 254
Hpy166II	GTNNAC	3 cut(s)	97, 118, 170
Hpy188I	TCNGA	4 cut(s)	37, 50, 194, 218
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	97, 118, 170
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	4 cut(s)	66, 155, 252, 278
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	231
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	32, 36, 89, 196
MvnI	CGCG	1 cut(s)	166
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	19
NmeAIII	GCCGAG	1 cut(s)	272
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	96, 252
RsaNI	GTAC	2 cut(s)	95, 251
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	204
SetI	ASST	4 cut(s)	10, 81, 188, 261
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	4 cut(s)	127, 152, 164, 292
TaaI	ACNGT	1 cut(s)	59
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	250
TscAI	CASTG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.