RchiOBHm_Chr2g0108141

Signal recognition particle receptor beta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006906
Physical Location & Seq
Forward (+)
19648178 .. 19649109
932 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48209

Sequence Viewer

Length: 663 bp
ATGAAAACAAAAACAAAAAAAACCAGTTTTCTCCAGCACATAAAACCCCAACAAAATCCCACCTCGAACTTTAACACTCTAAAAGCTCACAACTTACATCCATGGAAGCTCTGCAAGGATCCCTCCCTCAAATCTCAGACCACCAATTCGGACCAGACAGTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTACACCCAACTCCCAAAATCGTCCACACTCTCCGCAAGAAACAAATCCAGAAACACCCGCAAACTCAACCGCGTCAACGAACAAGACCCACCTCTCTCCGAGTCCCAAAGCCAAGCCCTTTCCGAAGAAACCCATTTCCAAACCCTGAAAGCCGAGTACAAAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGCGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTAGTAGCGGTGAGTATGGTGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCCGAAAAAGGGAGGAGCTGAAATGGGTGTTGGATGATCATGTGGAGATAAAAGAGGAGTGGTTTGATGGTGAGAATAGGGTGTGGGACCCGACAAAGCGGCGGCGAGGGGGAGGTGATTCAGTTTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf PPR

Protein Analysis

220

Amino Acids

25.21

Weight (kDa)

9.63

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 7 cut(s) 228, 253, 265, 393, 465, 628, 631
AclWI GGATC 2 cut(s) 113, 126
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 2 cut(s) 197, 353
AfiI CCNNNNNNNGG 3 cut(s) 451, 537, 538
AgsI TTSAA 1 cut(s) 505
AjuI GAANNNNNNNTTGG 4 cut(s) 390, 422, 542, 574
AluBI AGCT 6 cut(s) 86, 109, 360, 451, 487, 547
AluI AGCT 6 cut(s) 86, 109, 360, 451, 487, 547
AlwI GGATC 2 cut(s) 113, 126
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspS9I GGNCC 2 cut(s) 151, 616
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 6 cut(s) 174, 355, 407, 479, 611, 656
AsuII TTCGAA 1 cut(s) 525
AvaII GGWCC 2 cut(s) 151, 616
BamHI GGATCC 1 cut(s) 118
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BccI CCATC 1 cut(s) 590
BceAI ACGGC 1 cut(s) 356
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 446
BisI GCNGC 2 cut(s) 629, 632
BlsI GCNGC 2 cut(s) 630, 633
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 2 cut(s) 151, 616
BmgT120I GGNCC 2 cut(s) 151, 616
BmiI GGNNCC 4 cut(s) 120, 443, 617, 618
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 101, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 537, 538
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 101, 416
BseGI GGATG 3 cut(s) 97, 417, 568
BseLI CCNNNNNNNGG 3 cut(s) 451, 537, 538
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 3 cut(s) 512, 557, 599
Bsh1236I CGCG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 2 cut(s) 283, 629
BslI CCNNNNNNNGG 3 cut(s) 451, 537, 538
BsmFI GGGAC 2 cut(s) 283, 629
BsmI GAATGC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 525
Bsp143I GATC 2 cut(s) 118, 565
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 7 cut(s) 228, 253, 265, 393, 465, 628, 631
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 4 cut(s) 120, 443, 617, 618
BspPI GGATC 2 cut(s) 113, 126
BspT104I TTCGAA 1 cut(s) 525
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 101, 416
BssMI GATC 2 cut(s) 118, 565
BssT1I CCWWGG 2 cut(s) 101, 416
Bst4CI ACNGT 2 cut(s) 160, 406
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 97, 417, 568
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 2 cut(s) 121, 568
BstMBI GATC 2 cut(s) 118, 565
BstSCI CCNGG 1 cut(s) 444
BstUI CGCG 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 3 cut(s) 97, 417, 568
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 151, 616
CseI GACGC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 196, 352
CviAII CATG 2 cut(s) 102, 569
CviQI GTAC 2 cut(s) 196, 352
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 120, 567
DpnII GATC 2 cut(s) 118, 565
Eco130I CCWWGG 2 cut(s) 101, 416
Eco47I GGWCC 2 cut(s) 151, 616
Eco57I CTGAAG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 101, 416
EcoT22I ATGCAT 1 cut(s) 511
ErhI CCWWGG 2 cut(s) 101, 416
FaeI CATG 2 cut(s) 105, 572
FaiI YATR 4 cut(s) 41, 103, 474, 570
FaqI GGGAC 2 cut(s) 283, 629
FatI CATG 2 cut(s) 101, 568
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 2 cut(s) 629, 632
FokI GGATG 3 cut(s) 84, 424, 575
Fsp4HI GCNGC 2 cut(s) 629, 632
GluI GCNGC 2 cut(s) 629, 632
GsuI CTGGAG 1 cut(s) 17
HapII CCGG 1 cut(s) 445
HgaI GACGC 1 cut(s) 256
Hin1II CATG 2 cut(s) 105, 572
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 2 cut(s) 296, 647
HpaII CCGG 1 cut(s) 445
HphI GGTGA 6 cut(s) 174, 355, 407, 479, 611, 656
Hpy166II GTNNAC 3 cut(s) 198, 219, 271
Hpy188I TCNGA 4 cut(s) 138, 151, 295, 319
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 3 cut(s) 198, 219, 271
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 160, 406
HpyCH4V TGCA 2 cut(s) 114, 509
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 105, 572
KflI GGGWCCC 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 2 cut(s) 118, 565
LmnI GCTCC 2 cut(s) 448, 544
LpnPI CCDG 8 cut(s) 37, 47, 167, 256, 353, 379, 437, 458
LweI GCATC 1 cut(s) 402
MalI GATC 2 cut(s) 120, 567
MboI GATC 2 cut(s) 118, 565
MboII GAAGA 2 cut(s) 332, 502
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 145, 398, 435
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 540
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 511
MvnI CGCG 1 cut(s) 267
NciI CCSGG 1 cut(s) 446
NcoI CCATGG 1 cut(s) 101
NdeII GATC 2 cut(s) 118, 565
NlaIII CATG 2 cut(s) 105, 572
NlaIV GGNNCC 4 cut(s) 120, 443, 617, 618
NmeAIII GCCGAG 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 511
NspV TTCGAA 1 cut(s) 525
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 2 cut(s) 630, 633
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 120, 443, 617, 618
PspPI GGNCC 2 cut(s) 151, 616
PspPPI RGGWCCY 1 cut(s) 616
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 2 cut(s) 197, 353
RsaNI GTAC 2 cut(s) 196, 352
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 629, 632
Sau3AI GATC 2 cut(s) 118, 565
Sau96I GGNCC 2 cut(s) 151, 616
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 446
SfaNI GCATC 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 2 cut(s) 151, 616
Sse9I AATT 3 cut(s) 145, 398, 435
SsiI CCGC 7 cut(s) 228, 253, 265, 393, 465, 628, 631
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 2 cut(s) 101, 416
TaaI ACNGT 2 cut(s) 160, 406
TaqI TCGA 2 cut(s) 65, 525
TasI AATT 3 cut(s) 145, 398, 435
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 631, 634
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 151, 616
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.