FvH4_1g20573

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007481
Physical Location & Seq
Forward (+)
12787116 .. 12787909
794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20573.t1

Sequence Viewer

Length: 648 bp
ATGGGACGGGACGGGACGGGACCGGTGTTTTTAGTTTCAAATCCCGCCGGGATCGGGACGGGACCGGGATTTACGGGATTTGTGCCCAGCCCTAATAGTGTGACTGTGATGACAGACCAACATTTAAAAGAATTTGCATGGGGCTTAGCAAATAACAAGCACCTATTTTTGTGGGTAGTGAGACCTGATGTGGTAAAGAGCGACTCTATAATGCTACCAGATGAGTTTCTTAAGGAGGTCAAGGACAGGGGATATATAGCAAGCTGGGCACCACAAGAACAAGTGTTGGGGCATAAATCTGTTGCGGTTTTTCTGACTCATTGTGGTTGGAATTCTATGTTGGAAACTGTAAGTGAAGGTGTTCCTATGATATGCTGGCCTTTCTTTGCTGATCAACAAACCAATTGTGGGTTTGCTTGTGGAAGTTGGGGCATTGGATTGGAGGTCAAGCATGATGTGAAGAGATGTGATATTGAAGGGGTTATTAAGGACATGATGGAAGGGGAGAAGGGGAAAGAGTTGAGGCAGAATGCATTGGAATGGAGGAAGAAGGCAATTGAAGCTACTGATATTGGTGGAGCATCTTATGGAAATTTTGATAGAATGATGCAGCGTCTTCTTGGGAATTATAGACAAAACCTATGGTAA

Protein Analysis

216

Amino Acids

23.97

Weight (kDa)

5.96

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 34 - 173 4.9e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 2 cut(s) 45, 305
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 3 cut(s) 131, 331, 592
AfiI CCNNNNNNNGG 2 cut(s) 54, 408
AflII CTTAAG 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 3 cut(s) 39, 476, 560
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 2 cut(s) 264, 563
AluI AGCT 2 cut(s) 264, 563
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 610
ApoI RAATTY 3 cut(s) 131, 331, 592
AsiGI ACCGGT 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 20, 62
AsuC2I CCSGG 2 cut(s) 49, 66
AvaII GGWCC 2 cut(s) 20, 62
BaeGI GKGCMC 2 cut(s) 87, 271
BanI GGYRCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 608
BbvI GCAGC 1 cut(s) 622
BccI CCATC 1 cut(s) 490
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 2 cut(s) 49, 66
BcoDI GTCTC 1 cut(s) 175
BfrI CTTAAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 612
Bme1390I CCNGG 2 cut(s) 49, 66
Bme18I GGWCC 2 cut(s) 20, 62
BmgT120I GGNCC 2 cut(s) 20, 62
BmiI GGNNCC 3 cut(s) 21, 63, 270
BmrFI CCNGG 2 cut(s) 49, 66
BmsI GCATC 2 cut(s) 590, 597
BpiI GAAGAC 1 cut(s) 608
Bpu1102I GCTNAGC 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 49, 66
BsaI GGTCTC 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 408
Bse118I RCCGGY 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 54, 408
BseSI GKGCMC 2 cut(s) 87, 271
BseXI GCAGC 1 cut(s) 622
BseYI CCCAGC 2 cut(s) 86, 264
BshFI GGCC 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 268
BshTI ACCGGT 1 cut(s) 22
BsiSI CCGG 3 cut(s) 23, 48, 65
BslFI GGGAC 6 cut(s) 18, 23, 28, 33, 70, 75
BslI CCNNNNNNNGG 2 cut(s) 54, 408
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 6 cut(s) 18, 23, 28, 33, 70, 75
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 1 cut(s) 379
Bso31I GGTCTC 1 cut(s) 175
Bsp1286I GDGCHC 2 cut(s) 87, 271
Bsp143I GATC 2 cut(s) 51, 391
Bsp1720I GCTNAGC 1 cut(s) 145
BspACI CCGC 2 cut(s) 45, 305
BspANI GGCC 1 cut(s) 379
BspLI GGNNCC 3 cut(s) 21, 63, 270
BspPI GGATC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssMI GATC 2 cut(s) 51, 391
Bst4CI ACNGT 2 cut(s) 106, 349
Bst6I CTCTTC 1 cut(s) 455
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 262, 377
BstDEI CTNAG 1 cut(s) 145
BstKTI GATC 2 cut(s) 54, 394
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 51, 391
BstMWI GCNNNNNNNGC 2 cut(s) 266, 560
BstSCI CCNGG 2 cut(s) 47, 64
BstSLI GKGCMC 2 cut(s) 87, 271
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 1 cut(s) 608
BsuRI GGCC 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 262, 377
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 20, 62
CseI GACGC 1 cut(s) 602
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 3 cut(s) 138, 452, 493
CviJI RGCY 5 cut(s) 90, 144, 264, 379, 563
CviKI_1 RGCY 5 cut(s) 90, 144, 264, 379, 563
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 53, 393
DpnII GATC 2 cut(s) 51, 391
DraI TTTAAA 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 20, 62
EcoRI GAATTC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 535
FaeI CATG 3 cut(s) 141, 455, 496
FaqI GGGAC 6 cut(s) 18, 23, 28, 33, 70, 75
FatI CATG 3 cut(s) 137, 451, 492
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 611
GluI GCNGC 1 cut(s) 611
GsaI CCCAGC 2 cut(s) 90, 268
HaeIII GGCC 1 cut(s) 379
HapII CCGG 3 cut(s) 23, 48, 65
HgaI GACGC 1 cut(s) 602
Hin1II CATG 3 cut(s) 141, 455, 496
HinfI GANTC 2 cut(s) 203, 316
HpaII CCGG 3 cut(s) 23, 48, 65
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 5 cut(s) 350, 470, 494, 502, 544
HpyCH4III ACNGT 2 cut(s) 106, 349
HpyCH4V TGCA 3 cut(s) 137, 533, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 560
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 3 cut(s) 141, 455, 496
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 51, 391
LmnI GCTCC 1 cut(s) 578
LpnPI CCDG 9 cut(s) 36, 61, 78, 100, 198, 231, 232, 250, 361
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 2 cut(s) 590, 597
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 53, 393
MboI GATC 2 cut(s) 51, 391
MboII GAAGA 3 cut(s) 472, 559, 608
MfeI CAATTG 2 cut(s) 403, 555
MhlI GDGCHC 2 cut(s) 87, 271
MluCI AATT 6 cut(s) 131, 331, 403, 555, 592, 625
MlyI GAGTC 2 cut(s) 197, 310
MmeI TCCRAC 2 cut(s) 308, 321
MnlI CCTC 4 cut(s) 229, 436, 516, 537
Mph1103I ATGCAT 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 3 cut(s) 125, 231, 486
MslI CAYNNNNRTG 1 cut(s) 538
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 3 cut(s) 23, 48, 65
MspR9I CCNGG 2 cut(s) 49, 66
MunI CAATTG 2 cut(s) 403, 555
Mva1269I GAATGC 1 cut(s) 535
MwoI GCNNNNNNNGC 2 cut(s) 266, 560
NciI CCSGG 2 cut(s) 49, 66
NdeII GATC 2 cut(s) 51, 391
NlaIII CATG 3 cut(s) 141, 455, 496
NlaIV GGNNCC 3 cut(s) 21, 63, 270
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 535
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 360
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 1 cut(s) 612
PleI GAGTC 2 cut(s) 197, 310
PpsI GAGTC 2 cut(s) 197, 310
PspFI CCCAGC 2 cut(s) 86, 264
PspN4I GGNNCC 3 cut(s) 21, 63, 270
PspPI GGNCC 2 cut(s) 20, 62
RseI CAYNNNNRTG 1 cut(s) 538
SaqAI TTAA 3 cut(s) 125, 231, 486
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 2 cut(s) 51, 391
Sau96I GGNCC 2 cut(s) 20, 62
SchI GAGTC 2 cut(s) 197, 310
ScrFI CCNGG 2 cut(s) 49, 66
SduI GDGCHC 2 cut(s) 87, 271
SetI ASST 8 cut(s) 165, 187, 240, 266, 361, 447, 565, 642
SfaNI GCATC 2 cut(s) 590, 597
SinI GGWCC 2 cut(s) 20, 62
SmiMI CAYNNNNRTG 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 6 cut(s) 131, 331, 403, 555, 592, 625
SsiI CCGC 2 cut(s) 45, 305
StyD4I CCNGG 2 cut(s) 47, 64
TaaI ACNGT 2 cut(s) 106, 349
TasI AATT 6 cut(s) 131, 331, 403, 555, 592, 625
Tru1I TTAA 3 cut(s) 125, 231, 486
Tru9I TTAA 3 cut(s) 125, 231, 486
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 610
Tsp45I GTSAC 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 20, 62
XapI RAATTY 3 cut(s) 131, 331, 592
XmnI GAANNNNTTC 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.