Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007481

Physical Location & Seq

Genomic Coordinates Forward (+)

26022450 .. 26022983

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACAGACCAGCATTTACAAGAATTTGCTTGGGGCTTAGCAAATAGCAAGCACCCATTTTTGTGGGTAGTAAGGCCTGATGTGGTAAAGAGTGAATCTGTAATTTTACCGGATGAATTTCTTGAGGAGGTCCAGGATAGGGGATATATAGCAAGTTGGGTACCACAAGAACAAGTGTTGGGGCATAAATCAGTTGGGGTTTTTCTGACTCATTGTGGTTGGAATTCTATGTTGGAAAGTGTAGGTGAGGGTGTGCCTGTGATTTGCTGGCCTTTCTTTGCTGATCAACAAACCAATTGTGGATTTGCTTGTGGACGTTGGGGCATTGGATTGGAGGTCAAGCATGATGTGAAGAGATGTGAAATTGAAGGAGTTGTTAAGGAAATGATGGAAGGGGAGAAGGGGAAGGAGTTGAAGCAAAATGCATTGAAATGGAGGAAGAAGGCAATTGAAGCTACTGACATTGGTGGAGCATCTTATGGTAATTTTGATAGAATGATGGAGCATCTTATTAAAAAGGTGGAGAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

177

Amino Acids

20.03

Weight (kDa)

5.54

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	1 - 137	3.9e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007481)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20573 FvH4_6g39800
malus_domestica	MD08G1185200.v1.1 MD09G1143200.v1.1 MD13G1080400.v1.1 MD16G1231200.v1.1 MD17G1126100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0124491
rosa_laevigata	RLG00000020768
rosa_multiflora	Rmu_co8063878.1_g000001 Rmu_co8251247.1_g000001 Rmu_co8298997.1_g000001 Rmu_sc0006451.1_g000003 Rmu_sc0012977.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154720 Rroxscaffold_3G00221760
rosa_rugosa	Rorug07G0320700
rosa_samantha	Rh2BG252200 Rh2BG318400 Rh2BG517200 Rh2BG518700 Rh2BG519200 Rh5BG203200 Rh7CG493100 Rh7CG493600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	23, 116, 223
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	4 cut(s)	368, 415, 430, 452
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
AoxI	GGCC	2 cut(s)	74, 269
ApoI	RAATTY	3 cut(s)	23, 116, 223
Asp718I	GGTACC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	160
BccI	CCATC	2 cut(s)	382, 493
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	283
BlpI	GCTNAGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	482, 514
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	76, 271
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	139
BsnI	GGCC	2 cut(s)	76, 271
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	76, 271
BspLI	GGNNCC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	160
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	50, 269
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	76, 271
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	50, 269
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	4 cut(s)	36, 76, 271, 455
CviKI_1	RGCY	4 cut(s)	36, 76, 271, 455
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	1 cut(s)	347
FaiI	YATR	6 cut(s)	147, 149, 186, 230, 345, 480
FatI	CATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	283
FokI	GGATG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	76, 271
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	2 cut(s)	95, 208
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	5 cut(s)	362, 386, 394, 400, 436
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	347
KpnI	GGTACC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	470, 502
LpnPI	CCDG	7 cut(s)	23, 90, 119, 123, 146, 253, 270
LweI	GCATC	2 cut(s)	482, 514
MaeII	ACGT	1 cut(s)	316
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	364, 451
MfeI	CAATTG	2 cut(s)	295, 447
MluCI	AATT	8 cut(s)	23, 102, 116, 223, 295, 363, 447, 484
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	2 cut(s)	200, 213
MnlI	CCTC	5 cut(s)	118, 121, 241, 328, 429
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	2 cut(s)	378, 513
MslI	CAYNNNNRTG	2 cut(s)	61, 430
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	2 cut(s)	295, 447
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	61, 430
SaqAI	TTAA	2 cut(s)	378, 513
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	6 cut(s)	132, 247, 319, 339, 457, 522
SfaNI	GCATC	2 cut(s)	482, 514
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	61, 430
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	8 cut(s)	23, 102, 116, 223, 295, 363, 447, 484
SseBI	AGGCCT	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	132
TaiI	ACGT	1 cut(s)	319
TasI	AATT	8 cut(s)	23, 102, 116, 223, 295, 363, 447, 484
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	378, 513
Tru9I	TTAA	2 cut(s)	378, 513
TspDTI	ATGAA	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	3 cut(s)	23, 116, 223
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.