Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8063878.1

Orthogroup ID

OG0007481

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 385

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8063878.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggagagtatttccgcaggaatgcctatgctctgttggccagtactttctgaccagcggatcaactgtcgctatacttgctatgagtggggtattggcatggagatcagtaatgatgtgaaaagagatgaagtaaagaaacttgttgaagagttaatggtaggagtgacgggtaaggaaatgaaaaataaggtcatggagtggaagaaactagcagaagaggccgctggtccacttggttcttcacttataaccttggacaattta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

89

Amino Acids

10.04

Weight (kDa)

4.93

Isoelectric Point (pI)

23.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007481)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20573 FvH4_6g39800
malus_domestica	MD08G1185200.v1.1 MD09G1143200.v1.1 MD13G1080400.v1.1 MD16G1231200.v1.1 MD17G1126100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0124491
rosa_laevigata	RLG00000020768
rosa_multiflora	Rmu_co8063878.1_g000001 Rmu_co8251247.1_g000001 Rmu_co8298997.1_g000001 Rmu_sc0006451.1_g000003 Rmu_sc0012977.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154720 Rroxscaffold_3G00221760
rosa_rugosa	Rorug07G0320700
rosa_samantha	Rh2BG252200 Rh2BG318400 Rh2BG517200 Rh2BG518700 Rh2BG519200 Rh5BG203200 Rh7CG493100 Rh7CG493600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AciI	CCGC	3 cut(s)	15, 58, 225
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	38
AfaI	GTAC	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	149
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	2 cut(s)	38, 222
AspS9I	GGNCC	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	40
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	40, 224
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	40, 224
Bsp143I	GATC	2 cut(s)	60, 105
BspACI	CCGC	3 cut(s)	15, 58, 225
BspANI	GGCC	2 cut(s)	40, 224
BspPI	GGATC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	60, 105
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	2 cut(s)	144, 213
BstKTI	GATC	2 cut(s)	63, 108
BstMBI	GATC	2 cut(s)	60, 105
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
BsuRI	GGCC	2 cut(s)	40, 224
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	100, 196
CviJI	RGCY	2 cut(s)	40, 224
CviKI_1	RGCY	2 cut(s)	40, 224
CviQI	GTAC	1 cut(s)	44
DpnI	GATC	2 cut(s)	62, 107
DpnII	GATC	2 cut(s)	60, 105
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	144, 213
EarI	CTCTTC	2 cut(s)	144, 213
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	103, 199
FaiI	YATR	6 cut(s)	29, 75, 84, 101, 197, 251
FatI	CATG	2 cut(s)	99, 195
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	40, 224
Hin1II	CATG	2 cut(s)	103, 199
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
Hsp92II	CATG	2 cut(s)	103, 199
Kzo9I	GATC	2 cut(s)	60, 105
LpnPI	CCDG	4 cut(s)	3, 54, 68, 213
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	62, 107
MboI	GATC	2 cut(s)	60, 105
MboII	GAAGA	4 cut(s)	161, 217, 230, 234
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	1 cut(s)	262
MluNI	TGGCCA	1 cut(s)	40
MnlI	CCTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	2 cut(s)	58, 227
Mva1269I	GAATGC	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
NdeII	GATC	2 cut(s)	60, 105
NlaIII	CATG	2 cut(s)	103, 199
NmuCI	GTSAC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	60, 105
Sau96I	GGNCC	1 cut(s)	230
ScaI	AGTACT	1 cut(s)	45
SetI	ASST	2 cut(s)	195, 257
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	15, 58, 225
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	144, 197
VpaK11BI	GGWCC	1 cut(s)	230
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.