MD13G1080400.v1.1

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
5640759 .. 5641037
279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1080400.v1.1.491

Sequence Viewer

Length: 279 bp
ATGCTTTGTTGGCCGTTTTTCGCGGAGCAGCAAGTGAACTGTAGGTATGCATGCACGACTTGGGGGGTGGGGTTGGAGATTTATAGCGACGTGAAGAGGGAAGGGGTGGAGGGTTTGGTGAGGGAGATGATGGAGAGGGAGAGTGGGAAGGTGATGAGGAACAAGACGGTGGAGTGGAAGAAGAAATCGAAGATTGCTTGTGCCGAAGGAGGGTCGTCCTATGAAGATTTTCAGAGGTTCGTTGCGTACCTAATGCATTTGTACACGTTCGGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.71

Weight (kDa)

7.63

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 23
AciI CCGC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 2 cut(s) 248, 263
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 264
AjiI CACGTC 1 cut(s) 91
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 130, 163
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 261
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 13
BspFNI CGCG 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 41, 169
Bst6I CTCTTC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 52
BstFNI CGCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 40
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 13
BtrI CACGTC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 247, 262
CviAII CATG 1 cut(s) 51
CviJI RGCY 2 cut(s) 13, 275
CviKI_1 RGCY 2 cut(s) 13, 275
CviQI GTAC 2 cut(s) 247, 262
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EcoT22I ATGCAT 2 cut(s) 52, 258
FaeI CATG 1 cut(s) 54
FaiI YATR 4 cut(s) 48, 52, 84, 222
FatI CATG 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 1 cut(s) 54
HphI GGTGA 2 cut(s) 130, 163
Hpy166II GTNNAC 2 cut(s) 37, 264
Hpy188I TCNGA 1 cut(s) 234
Hpy8I GTNNAC 2 cut(s) 37, 264
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 95, 142, 200
HpyCH4III ACNGT 2 cut(s) 41, 169
HpyCH4IV ACGT 2 cut(s) 90, 266
HpyCH4V TGCA 3 cut(s) 50, 54, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 2 cut(s) 90, 266
Hsp92II CATG 1 cut(s) 54
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 1 cut(s) 40
MaeII ACGT 2 cut(s) 90, 266
MboII GAAGA 5 cut(s) 106, 190, 193, 202, 236
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 7 cut(s) 90, 103, 114, 129, 150, 203, 228
Mph1103I ATGCAT 2 cut(s) 52, 258
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 277
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 54
NsiI ATGCAT 2 cut(s) 52, 258
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 30
RsaI GTAC 2 cut(s) 248, 263
RsaNI GTAC 2 cut(s) 247, 262
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 1 cut(s) 29
SetI ASST 6 cut(s) 47, 93, 153, 239, 252, 269
SfcI CTRYAG 1 cut(s) 40
SgeI CNNG 8 cut(s) 34, 44, 63, 67, 72, 103, 175, 210
SphI GCATGC 1 cut(s) 54
SsiI CCGC 1 cut(s) 23
TaaI ACNGT 2 cut(s) 41, 169
TaiI ACGT 2 cut(s) 93, 269
TaqI TCGA 1 cut(s) 188
TatI WGTACW 1 cut(s) 261
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 237
XceI RCATGY 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 228
Zsp2I ATGCAT 2 cut(s) 52, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.