Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298997.1

Orthogroup ID

OG0007481

Physical Location & Seq

Genomic Coordinates Forward (+)

56 .. 352

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggagagtatttctgctggagttccaatgctctgttggccattaattggtgaccagcggatcaactgtcgctatacttgctatgagtggggtattggcatggagatcagtaatgatgtgaagagagacgaagtacagaaactcattgaagagttaatggtaggagagaaggctaagaaactgaaaaataaagtcatggagtggaagatactagcaaaagaggccactgctccacttggttcgtcaaccataacattagacaatttagttaagcaagtgctattaagcaaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

98

Amino Acids

11.08

Weight (kDa)

6.29

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007481)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20573 FvH4_6g39800
malus_domestica	MD08G1185200.v1.1 MD09G1143200.v1.1 MD13G1080400.v1.1 MD16G1231200.v1.1 MD17G1126100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0124491
rosa_laevigata	RLG00000020768
rosa_multiflora	Rmu_co8063878.1_g000001 Rmu_co8251247.1_g000001 Rmu_co8298997.1_g000001 Rmu_sc0006451.1_g000003 Rmu_sc0012977.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154720 Rroxscaffold_3G00221760
rosa_rugosa	Rorug07G0320700
rosa_samantha	Rh2BG252200 Rh2BG318400 Rh2BG517200 Rh2BG518700 Rh2BG519200 Rh5BG203200 Rh7CG493100 Rh7CG493600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	38
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	2 cut(s)	38, 222
AseI	ATTAAT	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	40, 224
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	40, 224
Bsp143I	GATC	2 cut(s)	60, 105
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	2 cut(s)	40, 224
BspPI	GGATC	1 cut(s)	68
BssMI	GATC	2 cut(s)	60, 105
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	2 cut(s)	116, 144
BstDEI	CTNAG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	63, 108
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	60, 105
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
BstPI	GGTNACC	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	40, 224
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	100, 196
CviJI	RGCY	3 cut(s)	40, 173, 224
CviKI_1	RGCY	3 cut(s)	40, 173, 224
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	62, 107
DpnII	GATC	2 cut(s)	60, 105
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	116, 144
EarI	CTCTTC	2 cut(s)	116, 144
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	2 cut(s)	103, 199
FaiI	YATR	5 cut(s)	75, 84, 101, 197, 251
FatI	CATG	2 cut(s)	99, 195
FspBI	CTAG	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	40, 224
Hin1II	CATG	2 cut(s)	103, 199
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	246
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	103, 199
Kzo9I	GATC	2 cut(s)	60, 105
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	2 cut(s)	3, 68
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	62, 107
MboI	GATC	2 cut(s)	60, 105
MboII	GAAGA	3 cut(s)	133, 161, 217
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	2 cut(s)	45, 262
MluNI	TGGCCA	1 cut(s)	40
MnlI	CCTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	4 cut(s)	44, 155, 270, 284
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
NdeII	GATC	2 cut(s)	60, 105
NlaIII	CATG	2 cut(s)	103, 199
NmuCI	GTSAC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	44
PspEI	GGTNACC	1 cut(s)	50
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	44, 155, 270, 284
Sau3AI	GATC	2 cut(s)	60, 105
SgeI	CNNG	8 cut(s)	30, 67, 90, 112, 208, 224, 248, 287
Sse9I	AATT	2 cut(s)	45, 262
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	2 cut(s)	45, 262
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	4 cut(s)	44, 155, 270, 284
Tru9I	TTAA	4 cut(s)	44, 155, 270, 284
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	47
VspI	ATTAAT	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.