Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007481

Physical Location & Seq

Genomic Coordinates Reverse (-)

23211606 .. 23211984

Gene Structure 379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1185200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATTTGTTGGTCTTTCTGTGGAGAGCAACCAACCAATTGTAGGTACAGTTGCAAAGAGTGGGGCATTGGATTCGAGTTAGGGGATGATGTTAAAAGAGATTATGTAGAGGGACTTGTGAGAAAGTTAACGGAGGGAGGGGAGGGCAAAGAGATGAAGAAGAATGCCTTAGAGTGGAAGAAGTTGGCAAAGGAGGCAACTACTTGTCCGAATGGGTTGTCTTTCTTGGCCTTGGACAAATTGATTAACCAGGTGCTTCTTTCTTCAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

8.28

Isoelectric Point (pI)

15.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007481)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20573 FvH4_6g39800
malus_domestica	MD08G1185200.v1.1 MD09G1143200.v1.1 MD13G1080400.v1.1 MD16G1231200.v1.1 MD17G1126100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0124491
rosa_laevigata	RLG00000020768
rosa_multiflora	Rmu_co8063878.1_g000001 Rmu_co8251247.1_g000001 Rmu_co8298997.1_g000001 Rmu_sc0006451.1_g000003 Rmu_sc0012977.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154720 Rroxscaffold_3G00221760
rosa_rugosa	Rorug07G0320700
rosa_samantha	Rh2BG252200 Rh2BG318400 Rh2BG517200 Rh2BG518700 Rh2BG519200 Rh5BG203200 Rh7CG493100 Rh7CG493600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	42, 174
AgsI	TTSAA	1 cut(s)	267
AjnI	CCWGG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 174
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	42, 174
BshFI	GGCC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	42, 174
BsmFI	GGGAC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	91
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	1 cut(s)	230
CviKI_1	RGCY	1 cut(s)	230
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaiI	YATR	1 cut(s)	105
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	126
FokI	GGATG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	72
HpaI	GTTAAC	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	267
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	129
LpnPI	CCDG	2 cut(s)	236, 263
MabI	ACCWGGT	1 cut(s)	249
MboII	GAAGA	4 cut(s)	169, 172, 190, 255
MfeI	CAATTG	1 cut(s)	37
MluCI	AATT	2 cut(s)	37, 239
MnlI	CCTC	5 cut(s)	103, 127, 131, 136, 187
MseI	TTAA	3 cut(s)	93, 128, 246
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	194
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	93, 128, 246
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	2 cut(s)	47, 255
SexAI	ACCWGGT	1 cut(s)	249
SgeI	CNNG	7 cut(s)	88, 128, 216, 238, 244, 262, 263
Sse9I	AATT	2 cut(s)	37, 239
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	37, 239
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	3 cut(s)	93, 128, 246
Tru9I	TTAA	3 cut(s)	93, 128, 246
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.