Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006451.1

Orthogroup ID

OG0007481

Physical Location & Seq

Genomic Coordinates Reverse (-)

6474 .. 6932

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006451.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgagcgaatcagcaactttgccacctgagtttgtagctgaaaccaaagaaagaggtttgatagtgagttggtgtccacatgaggaagtccttaatcacccatcagttggagggtttctaacacactgcggttggcattcaaccatggagagtttgactcctggagtgcctatgatctgttggccattctttacagaactgcagacaaactgttacaagatttgtaaagaatggggcataggaatggagatcggtagtgatgtgaagagagacgaagttcagaagctcgttaaagagataatggaaggagagaagggtaagactatgagaaaaaatatattggaatggaagaagcttgcaaaagaagcaattgctccgcatgggtcctcattcaaaaatctagacattctagtgaatcaagttctactaagaaaaagagaaggtcgggcaggtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

152

Amino Acids

17.18

Weight (kDa)

6.96

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007481)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20573 FvH4_6g39800
malus_domestica	MD08G1185200.v1.1 MD09G1143200.v1.1 MD13G1080400.v1.1 MD16G1231200.v1.1 MD17G1126100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0124491
rosa_laevigata	RLG00000020768
rosa_multiflora	Rmu_co8063878.1_g000001 Rmu_co8251247.1_g000001 Rmu_co8298997.1_g000001 Rmu_sc0006451.1_g000003 Rmu_sc0012977.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154720 Rroxscaffold_3G00221760
rosa_rugosa	Rorug07G0320700
rosa_samantha	Rh2BG252200 Rh2BG318400 Rh2BG517200 Rh2BG518700 Rh2BG519200 Rh5BG203200 Rh7CG493100 Rh7CG493600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	107
AciI	CCGC	2 cut(s)	129, 377
AcoI	YGGCCR	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	141, 394
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	38, 286, 355
AluI	AGCT	3 cut(s)	38, 286, 355
Alw26I	GTCTC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	384
BalI	TGGCCA	1 cut(s)	184
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	401, 410
BfmI	CTRYAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	174, 249
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	129, 377
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	174, 249
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	27, 428
BstDSI	CCRYGG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	177, 252
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	174, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	384
CviAII	CATG	3 cut(s)	80, 145, 380
CviJI	RGCY	4 cut(s)	38, 184, 286, 355
CviKI_1	RGCY	4 cut(s)	38, 184, 286, 355
DdeI	CTNAG	2 cut(s)	27, 428
DpnI	GATC	2 cut(s)	176, 251
DpnII	GATC	2 cut(s)	174, 249
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	3 cut(s)	83, 148, 383
FaiI	YATR	7 cut(s)	81, 146, 173, 239, 326, 338, 381
FatI	CATG	3 cut(s)	79, 144, 379
FspBI	CTAG	2 cut(s)	401, 410
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	83, 148, 383
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	8, 157, 415
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	299, 307, 434
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	202, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	27, 428
Hsp92II	CATG	3 cut(s)	83, 148, 383
Kzo9I	GATC	2 cut(s)	174, 249
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	4 cut(s)	39, 147, 174, 435
MaeI	CTAG	2 cut(s)	401, 410
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	176, 251
MboI	GATC	2 cut(s)	174, 249
MboII	GAAGA	2 cut(s)	277, 361
MfeI	CAATTG	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	47, 76, 104, 397
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	2 cut(s)	93, 291
MslI	CAYNNNNRTG	2 cut(s)	242, 410
Msp20I	TGGCCA	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	174, 249
NlaIII	CATG	3 cut(s)	83, 148, 383
NlaIV	GGNNCC	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	8, 415
PflMI	CCANNNNNTGG	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	160
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	384
PspPPI	RGGWCCY	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	204
RseI	CAYNNNNRTG	2 cut(s)	242, 410
SaqAI	TTAA	2 cut(s)	93, 291
Sau3AI	GATC	2 cut(s)	174, 249
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	7 cut(s)	28, 40, 58, 288, 357, 445, 454
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	242, 410
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	2 cut(s)	129, 377
SspMI	CTAG	2 cut(s)	401, 410
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	212
TasI	AATT	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	8, 415
Tru1I	TTAA	2 cut(s)	93, 291
Tru9I	TTAA	2 cut(s)	93, 291
TscAI	CASTG	1 cut(s)	131
TspRI	CASTG	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	384
XbaI	TCTAGA	1 cut(s)	400
XspI	CTAG	2 cut(s)	401, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.