FvH4_6g39800

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007481
Physical Location & Seq
Forward (+)
31411474 .. 31415892
4419 bp
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UTR
Exon/CDS
Intron
FvH4_6g39800.t1

Sequence Viewer

Length: 405 bp
ATGGAGAGTTTGTGTGCAGGTGTGCCTATGCTGTGTTGGCCTTTCTTTTCAGATCAGCAAACAAATTGTTGGTTTGTTTGTAATGAATGGGATATTGGTATGGAGATCAGTAATGAAGTCAAGAGAGACGAAGTTGAAAAGCTTGTTAGAGACTTGATGGAAGGAGAGAAGGGTGAGAAAATGAAAACTAGGGTCATGAAATGGAAGAAACTTGCAGAAGAAGCAACTGCACTGCATGAAACGGGTCTAATAGACAGCTGGTGCCCACAAGAGCAACTCCTTAACCACCCATCATATCAGTTGGAGAACAGTAAACAAACTGTTTCTTTACTAACAAGAAATGGGGCATTGGCTTGGAGATGGACAACGGAAGAAGTTGAGAAGCTTGTTCGAGAGTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

135

Amino Acids

15.76

Weight (kDa)

4.92

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 67 2.3e-06 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 261
AgsI TTSAA 1 cut(s) 137
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 3 cut(s) 142, 258, 385
AluI AGCT 3 cut(s) 142, 258, 385
Alw26I GTCTC 2 cut(s) 120, 144
AoxI GGCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 261
BccI CCATC 3 cut(s) 151, 298, 354
BcoDI GTCTC 2 cut(s) 120, 144
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 263
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 266
BsgI GTGCAG 2 cut(s) 36, 213
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 120, 144
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 52, 105
BspANI GGCC 1 cut(s) 40
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 261
BssMI GATC 2 cut(s) 52, 105
Bst4CI ACNGT 2 cut(s) 311, 322
BstKTI GATC 2 cut(s) 55, 108
BstMAI GTCTC 2 cut(s) 120, 144
BstMBI GATC 2 cut(s) 52, 105
BstMWI GCNNNNNNNGC 2 cut(s) 37, 221
BstSLI GKGCMC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 195
CviAII CATG 2 cut(s) 196, 236
CviJI RGCY 5 cut(s) 40, 142, 258, 353, 385
CviKI_1 RGCY 5 cut(s) 40, 142, 258, 353, 385
DpnI GATC 2 cut(s) 54, 107
DpnII GATC 2 cut(s) 52, 105
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 2 cut(s) 199, 239
FaiI YATR 5 cut(s) 29, 101, 197, 237, 295
FatI CATG 2 cut(s) 195, 235
FspBI CTAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 40
Hin1II CATG 2 cut(s) 199, 239
HindIII AAGCTT 2 cut(s) 140, 383
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 121, 196, 392
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 155, 163
HpyCH4III ACNGT 2 cut(s) 311, 322
HpyCH4V TGCA 4 cut(s) 17, 215, 230, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 221
Hsp92II CATG 2 cut(s) 199, 239
Kzo9I GATC 2 cut(s) 52, 105
LpnPI CCDG 2 cut(s) 3, 244
MaeI CTAG 1 cut(s) 189
MalI GATC 2 cut(s) 54, 107
MboI GATC 2 cut(s) 52, 105
MboII GAAGA 3 cut(s) 217, 230, 383
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 282
MseI TTAA 2 cut(s) 282, 403
MspA1I CMGCKG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 37, 221
NdeII GATC 2 cut(s) 52, 105
NlaIII CATG 2 cut(s) 199, 239
NlaIV GGNNCC 1 cut(s) 263
PagI TCATGA 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 282, 403
Sau3AI GATC 2 cut(s) 52, 105
SduI GDGCHC 1 cut(s) 266
SetI ASST 4 cut(s) 22, 144, 260, 387
Sse9I AATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 311, 322
TaqI TCGA 1 cut(s) 391
TasI AATT 1 cut(s) 64
Tru1I TTAA 2 cut(s) 282, 403
Tru9I TTAA 2 cut(s) 282, 403
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 5 cut(s) 99, 129, 197, 212, 252
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 237
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.