Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007481

Physical Location & Seq

Genomic Coordinates Forward (+)

68558940 .. 68560265

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGAGTATGTCTGCAGGAGTGTCTATGCTCTGTTGGCCATTACTTGGTGACCAGCGGATCAACGGTCGCTATACTTGCTATGAGTGGGGTATTGGCATGGAGATCAGTAAGGATGTGAAAAGAGATGAAGTACAGAAACTTTTTGAAGAGTTGATGGTAGGAGAGAAGGGTAAGGAAATGAAAAATAAGGTCATGGAGTGGAAGAAACTAGCAGAAGAGGCTGCTGGTCCGCTTGTGTGGAAGGGCAGGGCACTGGACATGGAGATTGCTGAGTTCCTTCGAACAATGCTCCAGTTGAATTTGGAGGACGGTCTGCTTCAACAAGCACTTGCTATAAGTGTGGCAAGCTTACACTTTGTTAGTAGTGTCCTGCTGGTTAACATGCAATCTGCTGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

135

Amino Acids

15.13

Weight (kDa)

4.95

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007481)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20573 FvH4_6g39800
malus_domestica	MD08G1185200.v1.1 MD09G1143200.v1.1 MD13G1080400.v1.1 MD16G1231200.v1.1 MD17G1126100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0124491
rosa_laevigata	RLG00000020768
rosa_multiflora	Rmu_co8063878.1_g000001 Rmu_co8251247.1_g000001 Rmu_co8298997.1_g000001 Rmu_sc0006451.1_g000003 Rmu_sc0012977.1_g000003
rosa_roxburghii	Rroxscaffold_2G00154720 Rroxscaffold_3G00221760
rosa_rugosa	Rorug07G0320700
rosa_samantha	Rh2BG252200 Rh2BG318400 Rh2BG517200 Rh2BG518700 Rh2BG519200 Rh5BG203200 Rh7CG493100 Rh7CG493600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	2 cut(s)	58, 233
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	149, 301, 323
AluBI	AGCT	1 cut(s)	351
AluI	AGCT	1 cut(s)	351
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	283
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	261, 295
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	261, 295
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	40
BsiEI	CGRYCG	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	60, 105
BspACI	CCGC	2 cut(s)	58, 233
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	68
BspT104I	TTCGAA	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	261, 295
BssMI	GATC	2 cut(s)	60, 105
Bst4CI	ACNGT	2 cut(s)	68, 314
Bst6I	CTCTTC	2 cut(s)	144, 213
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	63, 108
BstMBI	GATC	2 cut(s)	60, 105
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
BstNSI	RCATGY	1 cut(s)	388
BstPI	GGTNACC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	4 cut(s)	100, 196, 262, 385
CviJI	RGCY	3 cut(s)	40, 224, 351
CviKI_1	RGCY	3 cut(s)	40, 224, 351
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	2 cut(s)	62, 107
DpnII	GATC	2 cut(s)	60, 105
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	144, 213
EarI	CTCTTC	2 cut(s)	144, 213
Eco47I	GGWCC	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	50
FaeI	CATG	4 cut(s)	103, 199, 265, 388
FaiI	YATR	9 cut(s)	11, 29, 75, 84, 101, 197, 263, 338, 386
FatI	CATG	4 cut(s)	99, 195, 261, 384
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	103, 199, 265, 388
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	349
HpaI	GTTAAC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	382
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	3 cut(s)	163, 238, 290
HpyCH4III	ACNGT	2 cut(s)	68, 314
HpyCH4V	TGCA	2 cut(s)	17, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	103, 199, 265, 388
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	60, 105
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	8 cut(s)	3, 68, 213, 235, 242, 308, 362, 386
Lsp1109I	GCAGC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	62, 107
MboI	GATC	2 cut(s)	60, 105
MboII	GAAGA	3 cut(s)	161, 217, 230
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	1 cut(s)	301
MluNI	TGGCCA	1 cut(s)	40
MnlI	CCTC	2 cut(s)	214, 301
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	2 cut(s)	381, 403
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	37, 78, 221
NdeII	GATC	2 cut(s)	60, 105
NlaIII	CATG	4 cut(s)	103, 199, 265, 388
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	381, 403
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	60, 105
Sau96I	GGNCC	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	2 cut(s)	195, 353
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	283
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	58, 233
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	68, 314
TaqI	TCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	301
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	381, 403
Tru9I	TTAA	2 cut(s)	381, 403
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	144, 197
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.