Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006973

Physical Location & Seq

Genomic Coordinates Reverse (-)

13102057 .. 13103021

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21031.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATTCTCAATATTTCAGTTTTTCTACACAAAACTCAGAGCATGAATTTGTTGAAGATTCCTCTCAAACAGCTTCCAAAAGGCCTGCAAGAGGTCTAAGCTTTAACGCAGACGAGGATCGACTCCTTGTCAGTGCTTGGTTGAACATTGGTTTGGATCCTATTCAAGGTAACGAGTGGAAACTTCAAACTTTTTGGGGAAAGATACACGATTACTATCATGAATACAAAACTTTTGATAGTGATCGTTCACAACTAATGTTGATCCAACGATGGAGAAAAATACAAAGGCTGGTGAACAAGTATTCAGGATGTGTAGCTGCTATAAATACATTAAATGAAAGCGGCAAGACTGAACAAGACAAGAAGAAAGAAAGAGATGAAAAGAAACCAGCTATTATGAAGGAGAAAGTTGAAGTTGATAAAGAGAAATTGAGGGTTAGAAAACTTGAGGCTGATAATAAGAAGTTTGAAGTAGAGATGAGAACGATGTCTATGGATACTTCTAAGATGAACCATAAGAAAAGGGCATACTATTCCAAACTACAAATGAAGATTTTGCAGGGTGACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

192

Amino Acids

22.63

Weight (kDa)

9.21

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006973)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21031 FvH4_4g19882 FvH4_5g29683 FvH4_6g38382
malus_domestica	MD07G1026100.v1.1
prunus_persica	Prupe.1G172500_v2.0.a1 Prupe.1G279700_v2.0.a1
pyrus_communis	pycom07g01990
rosa_chinensis	RchiOBHm_Chr2g0117811 RchiOBHm_Chr6g0270241 RchiOBHm_Chr7g0215961
rosa_multiflora	Rmu_sc0001477.1_g000012 Rmu_sc0002693.1_g000005 Rmu_sc0003073.1_g000010
rosa_roxburghii	Rroxscaffold_1G00049230 Rroxscaffold_4G00327030
rosa_rugosa	Rorug03G0186700 Rorug05G0239600 Rorug06G0145300
rosa_wichuraiana	Rw1G019540 Rw1G026630 Rw2G015000 Rw2G052400 Rw6G033100 Rw7G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	4 cut(s)	126, 152, 165, 259
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	92, 167
AgsI	TTSAA	6 cut(s)	56, 145, 167, 188, 416, 473
AhdI	GACNNNNNGTC	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	4 cut(s)	74, 102, 320, 395
AluI	AGCT	4 cut(s)	74, 102, 320, 395
AlwI	GGATC	4 cut(s)	126, 152, 165, 259
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	2 cut(s)	321, 346
BlsI	GCNGC	2 cut(s)	322, 347
BmeRI	GACNNNNNGTC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	2 cut(s)	216, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 167
Bse8I	GATNNNNATC	2 cut(s)	216, 243
BseGI	GGATG	1 cut(s)	317
BseJI	GATNNNNATC	2 cut(s)	216, 243
BseLI	CCNNNNNNNGG	2 cut(s)	92, 167
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	92, 167
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	118, 157, 244, 264
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	4 cut(s)	126, 152, 165, 259
BssMI	GATC	4 cut(s)	118, 157, 244, 264
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	37, 98, 507
BstENI	CCTNNNNNAGG	2 cut(s)	90, 165
BstF5I	GGATG	1 cut(s)	317
BstKTI	GATC	4 cut(s)	121, 160, 247, 267
BstMBI	GATC	4 cut(s)	118, 157, 244, 264
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	220
CviAII	CATG	2 cut(s)	44, 221
CviJI	RGCY	7 cut(s)	74, 85, 102, 292, 320, 395, 455
CviKI_1	RGCY	7 cut(s)	74, 85, 102, 292, 320, 395, 455
DdeI	CTNAG	3 cut(s)	37, 98, 507
DpnI	GATC	4 cut(s)	120, 159, 246, 266
DpnII	GATC	4 cut(s)	118, 157, 244, 264
DriI	GACNNNNNGTC	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	128
Eco147I	AGGCCT	1 cut(s)	85
EcoNI	CCTNNNNNAGG	2 cut(s)	90, 165
FaeI	CATG	2 cut(s)	47, 224
FaiI	YATR	7 cut(s)	45, 222, 326, 401, 497, 519, 532
FatI	CATG	2 cut(s)	43, 220
Fnu4HI	GCNGC	2 cut(s)	321, 346
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	321, 346
FspBI	CTAG	1 cut(s)	574
GluI	GCNGC	2 cut(s)	321, 346
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	47, 224
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	3 cut(s)	5, 59, 123
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	251, 298
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	221, 309
Hpy8I	GTNNAC	2 cut(s)	251, 298
HpyAV	CCTTC	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	89, 562
HpyF3I	CTNAG	3 cut(s)	37, 98, 507
Hsp92II	CATG	2 cut(s)	47, 224
Kzo9I	GATC	4 cut(s)	118, 157, 244, 264
LpnPI	CCDG	5 cut(s)	99, 278, 294, 405, 548
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	574
MaeIII	GTNAC	2 cut(s)	170, 566
MalI	GATC	4 cut(s)	120, 159, 246, 266
MboI	GATC	4 cut(s)	118, 157, 244, 264
MboII	GAAGA	3 cut(s)	68, 379, 565
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	47, 431
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	5 cut(s)	73, 86, 109, 429, 445
MseI	TTAA	2 cut(s)	105, 335
NdeII	GATC	4 cut(s)	118, 157, 244, 264
NlaIII	CATG	2 cut(s)	47, 224
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	5, 59
PkrI	GCNGC	2 cut(s)	322, 347
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	105, 335
SatI	GCNGC	2 cut(s)	321, 346
Sau3AI	GATC	4 cut(s)	118, 157, 244, 264
SchI	GAGTC	1 cut(s)	117
SetI	ASST	6 cut(s)	76, 97, 104, 172, 322, 397
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	47, 431
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	1 cut(s)	574
StuI	AGGCCT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	121
TasI	AATT	2 cut(s)	47, 431
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	2 cut(s)	5, 59
Tru1I	TTAA	2 cut(s)	105, 335
Tru9I	TTAA	2 cut(s)	105, 335
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	7 cut(s)	60, 237, 354, 396, 416, 527, 566
TspRI	CASTG	1 cut(s)	139
XagI	CCTNNNNNAGG	2 cut(s)	90, 165
XapI	RAATTY	1 cut(s)	47
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.