Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001477.1

Orthogroup ID

OG0006973

Physical Location & Seq

Genomic Coordinates Forward (+)

46183 .. 47162

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001477.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggattctcaatattcacggcaagactcagagcattcaccagctgatgaggtctatcaagtggcttacaaaaggcctccaagaggtcccaactttaatgtagaggaggataaacttcttataagtgcctggttgaatactgatgcaaagaagatgtttgtagcacaagaaaagcttcggttcaatcttgatcatgcttggattttgttgaggcaccaaccaaagtggatacaattaatgcaagagttggacaacaagaaaagtaagcaaagatctaagtcttgtataactaatatctcgtcatcttcaactacaggccttctcatagatattgaagaagacacgaacacttgcttttcagtgtctagaccaccaggtaagaaggctgagaaaagaaatctgaaagaaaccactgatcaattggtgcaaatacaaaaattacatcaagagaaaaaagaaagagatgaaaagaaactagaaattatgaaggagaaagttgaagttgacaaggagaaactgcgagttgggaaacttgaggctgagaatagaaaatttgaggctgagatgagaaatatgtatatggatacatctactatgaatcatgagcagagggcatattattccaaacttcaaatgaaaattttgcaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

217

Amino Acids

25.65

Weight (kDa)

9.0

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006973)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21031 FvH4_4g19882 FvH4_5g29683 FvH4_6g38382
malus_domestica	MD07G1026100.v1.1
prunus_persica	Prupe.1G172500_v2.0.a1 Prupe.1G279700_v2.0.a1
pyrus_communis	pycom07g01990
rosa_chinensis	RchiOBHm_Chr2g0117811 RchiOBHm_Chr6g0270241 RchiOBHm_Chr7g0215961
rosa_multiflora	Rmu_sc0001477.1_g000012 Rmu_sc0002693.1_g000005 Rmu_sc0003073.1_g000010
rosa_roxburghii	Rroxscaffold_1G00049230 Rroxscaffold_4G00327030
rosa_rugosa	Rorug03G0186700 Rorug05G0239600 Rorug06G0145300
rosa_wichuraiana	Rw1G019540 Rw1G026630 Rw2G015000 Rw2G052400 Rw6G033100 Rw7G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	551, 639
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	136, 184, 309, 335, 500, 632
AjnI	CCWGG	2 cut(s)	128, 373
AluBI	AGCT	2 cut(s)	44, 175
AluI	AGCT	2 cut(s)	44, 175
AoxI	GGCC	2 cut(s)	74, 316
ApoI	RAATTY	2 cut(s)	551, 639
AseI	ATTAAT	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	130, 375
BciVI	GTATCC	2 cut(s)	222, 577
BclI	TGATCA	2 cut(s)	190, 415
BfaI	CTAG	2 cut(s)	366, 476
BfmI	CTRYAG	1 cut(s)	312
BfuI	GTATCC	2 cut(s)	222, 577
BglII	AGATCT	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	130, 375
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	88, 215
BmrFI	CCNGG	2 cut(s)	130, 375
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	130, 375
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	4 cut(s)	42, 378, 531, 552
BseRI	GAGGAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	76, 318
BshNI	GGYRCC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	76, 318
Bsp143I	GATC	3 cut(s)	190, 272, 415
BspANI	GGCC	2 cut(s)	76, 318
BspCNI	CTCAG	4 cut(s)	41, 379, 532, 553
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	88, 215
BspT107I	GGYRCC	1 cut(s)	213
BssMI	GATC	3 cut(s)	190, 272, 415
Bst2UI	CCWGG	2 cut(s)	130, 375
BstDEI	CTNAG	5 cut(s)	28, 276, 387, 540, 561
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	193, 275, 418
BstMBI	GATC	3 cut(s)	190, 272, 415
BstNI	CCWGG	2 cut(s)	130, 375
BstSCI	CCNGG	2 cut(s)	128, 373
BstSFI	CTRYAG	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuI	GTATCC	2 cut(s)	222, 577
BsuRI	GGCC	2 cut(s)	76, 318
BtsIMutI	CAGTG	2 cut(s)	366, 411
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	2 cut(s)	194, 602
CviJI	RGCY	8 cut(s)	44, 65, 76, 175, 318, 386, 539, 560
CviKI_1	RGCY	8 cut(s)	44, 65, 76, 175, 318, 386, 539, 560
DdeI	CTNAG	5 cut(s)	28, 276, 387, 540, 561
DpnI	GATC	3 cut(s)	192, 274, 417
DpnII	GATC	3 cut(s)	190, 272, 415
Eco147I	AGGCCT	2 cut(s)	76, 318
Eco47I	GGWCC	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	128, 373
FaeI	CATG	2 cut(s)	197, 605
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	193, 601
FbaI	TGATCA	2 cut(s)	190, 415
FspBI	CTAG	2 cut(s)	366, 476
HaeIII	GGCC	2 cut(s)	76, 318
Hin1II	CATG	2 cut(s)	197, 605
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	5, 26, 598
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	2 cut(s)	31, 402
Hpy188III	TCNNGA	4 cut(s)	188, 366, 446, 602
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	3 cut(s)	329, 376, 481
HpyCH4V	TGCA	4 cut(s)	146, 241, 427, 646
HpyF3I	CTNAG	5 cut(s)	28, 276, 387, 540, 561
Hsp92II	CATG	2 cut(s)	197, 605
Ksp22I	TGATCA	2 cut(s)	190, 415
Kzo9I	GATC	3 cut(s)	190, 272, 415
LpnPI	CCDG	6 cut(s)	54, 115, 142, 300, 360, 387
LweI	GCATC	1 cut(s)	133
MabI	ACCWGGT	1 cut(s)	373
MaeI	CTAG	2 cut(s)	366, 476
MalI	GATC	3 cut(s)	192, 274, 417
MboI	GATC	3 cut(s)	190, 272, 415
MboII	GAAGA	4 cut(s)	163, 297, 347, 350
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	272
MluCI	AATT	6 cut(s)	233, 419, 437, 480, 551, 639
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	43, 77, 87, 97, 100, 204, 529, 550, 603
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	2 cut(s)	96, 236
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	130, 375
MunI	CAATTG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	130, 375
NdeII	GATC	3 cut(s)	190, 272, 415
NlaIII	CATG	2 cut(s)	197, 605
NlaIV	GGNNCC	2 cut(s)	88, 215
PagI	TCATGA	1 cut(s)	601
PceI	AGGCCT	2 cut(s)	76, 318
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	5, 598
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	128, 373
PspGI	CCWGG	2 cut(s)	128, 373
PspN4I	GGNNCC	2 cut(s)	88, 215
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	96, 236
Sau3AI	GATC	3 cut(s)	190, 272, 415
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	130, 375
SetI	ASST	5 cut(s)	46, 54, 88, 177, 379
SexAI	ACCWGGT	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	6 cut(s)	233, 419, 437, 480, 551, 639
SseBI	AGGCCT	2 cut(s)	76, 318
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	2 cut(s)	366, 476
StuI	AGGCCT	2 cut(s)	76, 318
StyD4I	CCNGG	2 cut(s)	128, 373
TasI	AATT	6 cut(s)	233, 419, 437, 480, 551, 639
TfiI	GAWTC	2 cut(s)	5, 598
Tru1I	TTAA	2 cut(s)	96, 236
Tru9I	TTAA	2 cut(s)	96, 236
TscAI	CASTG	2 cut(s)	366, 418
TspDTI	ATGAA	4 cut(s)	480, 500, 611, 650
TspRI	CASTG	2 cut(s)	366, 418
VpaK11BI	GGWCC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	2 cut(s)	551, 639
XbaI	TCTAGA	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	366, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.