Rw1G026630

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006973
Physical Location & Seq
Forward (+)
53844054 .. 53848175
4122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026630.1

Sequence Viewer

Length: 807 bp
ATGGGTCTTTTGCCATCTGGACACCCAACGGTATTTTTGACCGACCAAACCATTCTCCAACAGATTTCTCCCATCTTTGTAATACTCATTCTCAAAGATTACCCTTTTCCTACCCCTTTTCCTACCATTTTCCCATACCACATGTGTGGGAAAATTACAGAGTACTATTATCAGTACAAGTCCTTTGACAATGATCGTTCACAACCGATGCTGACACAAAGGTGGGGAAAAATACAAAAGGTGATGAACAAATTTTCAGGATGTTTTGCAGCTATAAATGAAAGACATGAAAGTGGGAAGACTAAACAAGACAAGATTGCAGATGCGAAGAAGATGTTTGAAGCACAAGAAAAGAGAAGGTTCACACTTGATCATGCTTGGATTTTGTTAAGGCACCAACCAAAGTGGATACAACTAATATCTAAATCTTCTATAACTAATATCTTATCATCTTCAACTACCGGCACTCACATAGTTATTGAAGAAGAAGAAAACACTTGCTTTCCAGTGGCTAGACCACCTGGTAAGAAGGCTGAGAAAAGAAAGCTGAAAGAAACCACTGATCAATTGGTGGAAATAAAAAAATTACAGCAAGAGAAAAAAGAAAGAGATGAAAGAAAACTAGAAATTATGAAGGAGAAAATTGAAGTTGACAAGGAGAAATTGCGAGTTAGGAAACTTGAGGCTGAGAATAGGAAAATTGAGGCTGAGATGAGAATTATGTCTATGGATACATTTACTATGAATCCGGAGTATAGGGCATATTATTCCAAACTTCAAATGAAAATTTTGCAAGGTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

268

Amino Acids

31.63

Weight (kDa)

9.38

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 119 - 263 9.6e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 748
AcsI RAATTY 2 cut(s) 251, 786
AfaI GTAC 2 cut(s) 164, 176
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 5 cut(s) 341, 456, 482, 647, 779
AjnI CCWGG 1 cut(s) 520
AleI CACNNNNGTG 2 cut(s) 144, 220
AluBI AGCT 2 cut(s) 272, 547
AluI AGCT 2 cut(s) 272, 547
Aor13HI TCCGGA 1 cut(s) 748
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 2 cut(s) 251, 786
AsuHPI GGTGA 1 cut(s) 253
BanI GGYRCC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 281
BccI CCATC 2 cut(s) 22, 80
BciT130I CCWGG 1 cut(s) 522
BciVI GTATCC 2 cut(s) 402, 724
BclI TGATCA 2 cut(s) 370, 562
BfaI CTAG 2 cut(s) 513, 623
BfuI GTATCC 2 cut(s) 402, 724
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 522
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 198, 313
BpiI GAAGAC 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 701
BsaWI WCCGGW 1 cut(s) 748
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 506
BseAI TCCGGA 1 cut(s) 748
BseBI CCWGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 266
BseMII CTCAG 3 cut(s) 525, 678, 699
BseNI ACTGG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 462, 749
Bsp13I TCCGGA 1 cut(s) 748
Bsp143I GATC 3 cut(s) 193, 370, 562
BspCNI CTCAG 3 cut(s) 526, 679, 700
BspEI TCCGGA 1 cut(s) 748
BspLI GGNNCC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 461
BssMI GATC 3 cut(s) 193, 370, 562
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 31
BstDEI CTNAG 3 cut(s) 534, 687, 708
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 3 cut(s) 196, 373, 565
BstMBI GATC 3 cut(s) 193, 370, 562
BstNI CCWGG 1 cut(s) 522
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 146
BsuI GTATCC 2 cut(s) 402, 724
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 513, 558
Cfr10I RCCGGY 1 cut(s) 461
CsiI ACCWGGT 1 cut(s) 520
Csp6I GTAC 2 cut(s) 163, 175
CspCI CAANNNNNGTGG 2 cut(s) 386, 421
CviAII CATG 3 cut(s) 142, 287, 374
CviJI RGCY 6 cut(s) 272, 512, 533, 547, 686, 707
CviKI_1 RGCY 6 cut(s) 272, 512, 533, 547, 686, 707
CviQI GTAC 2 cut(s) 163, 175
DdeI CTNAG 3 cut(s) 534, 687, 708
DpnI GATC 3 cut(s) 195, 372, 564
DpnII GATC 3 cut(s) 193, 370, 562
EcoRII CCWGG 1 cut(s) 520
FaeI CATG 3 cut(s) 145, 290, 377
FatI CATG 3 cut(s) 141, 286, 373
FbaI TGATCA 2 cut(s) 370, 562
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 513, 623
GluI GCNGC 1 cut(s) 270
HapII CCGG 2 cut(s) 462, 749
Hin1II CATG 3 cut(s) 145, 290, 377
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 1 cut(s) 745
HpaII CCGG 2 cut(s) 462, 749
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 200, 363, 652
Hpy188III TCNNGA 3 cut(s) 18, 258, 749
Hpy8I GTNNAC 3 cut(s) 200, 363, 652
HpyAV CCTTC 3 cut(s) 351, 523, 628
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 269, 320, 793
HpyF3I CTNAG 3 cut(s) 534, 687, 708
Hsp92II CATG 3 cut(s) 145, 290, 377
Kpn2I TCCGGA 1 cut(s) 748
Ksp22I TGATCA 2 cut(s) 370, 562
Kzo9I GATC 3 cut(s) 193, 370, 562
LpnPI CCDG 7 cut(s) 3, 243, 475, 507, 519, 534, 762
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 198, 313
MabI ACCWGGT 1 cut(s) 520
MaeI CTAG 2 cut(s) 513, 623
MalI GATC 3 cut(s) 195, 372, 564
MboI GATC 3 cut(s) 193, 370, 562
MboII GAAGA 8 cut(s) 310, 340, 343, 420, 444, 494, 497, 500
MfeI CAATTG 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 2 cut(s) 676, 697
MroI TCCGGA 1 cut(s) 748
MseI TTAA 1 cut(s) 389
MslI CAYNNNNRTG 3 cut(s) 144, 220, 291
MspI CCGG 2 cut(s) 462, 749
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 522
NdeII GATC 3 cut(s) 193, 370, 562
NlaIII CATG 3 cut(s) 145, 290, 377
NlaIV GGNNCC 1 cut(s) 395
NspI RCATGY 1 cut(s) 145
OliI CACNNNNGTG 2 cut(s) 144, 220
PciI ACATGT 1 cut(s) 141
PfeI GAWTC 1 cut(s) 745
PkrI GCNGC 1 cut(s) 271
PscI ACATGT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 1 cut(s) 395
RsaI GTAC 2 cut(s) 164, 176
RsaNI GTAC 2 cut(s) 163, 175
RseI CAYNNNNRTG 3 cut(s) 144, 220, 291
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 193, 370, 562
ScaI AGTACT 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 522
SetI ASST 7 cut(s) 224, 243, 274, 362, 523, 549, 799
SexAI ACCWGGT 1 cut(s) 520
SfaNI GCATC 2 cut(s) 198, 313
SmiMI CAYNNNNRTG 3 cut(s) 144, 220, 291
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SspMI CTAG 2 cut(s) 513, 623
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 1 cut(s) 31
TaqII GACCGA 1 cut(s) 56
TatI WGTACW 2 cut(s) 162, 174
TfiI GAWTC 1 cut(s) 745
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TscAI CASTG 2 cut(s) 513, 565
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 7 cut(s) 260, 294, 303, 627, 647, 758, 797
TspRI CASTG 2 cut(s) 513, 565
XapI RAATTY 2 cut(s) 251, 786
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XspI CTAG 2 cut(s) 513, 623
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.