RchiOBHm_Chr6g0270241

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006973
Physical Location & Seq
Forward (+)
28083991 .. 28084800
810 bp
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UTR
Exon/CDS
Intron
PRQ24243

Sequence Viewer

Length: 459 bp
ATGTTGACACAATGGTGGGGAAAAATAAAAAAGGTGGTGAACAAATTTTCAGGATGTTTTGCAGCTATAAATGAAAGACATGAAAGTGGGAAGACTGAACAAGACAAGATTGCAGATGCAAAGAAGATGTTTGAAGCACAAGAAAAGATTCGGTTCAATCTTGATCATGCTTGGATTTTGTTAAGGCACCAACCAAAGTGGATACAACTAATGCAAGAGCTGGACATCAAGAAAAGTAAGCCAAGATCTAAATCTTCTATAACTAATATCTCATCATCTTCAACTACAAGCACTCACATAGATATAGAAGAAGGCACGAACACTTGCTTTCCAATGTCTAGACCACCGGGTAAGAAGGCTGAGAAAAGAAAGCTGAAAGAAACCACTGATCAATTGGTGCAAATACAAAAATTACATCAAGAGAAAAAAGAAAGAGATGAAAAAAACTGGAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

152

Amino Acids

17.86

Weight (kDa)

9.75

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 52 - 147 2.4e-14 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 44
AgsI TTSAA 3 cut(s) 134, 157, 282
AleI CACNNNNGTG 1 cut(s) 13
AluBI AGCT 3 cut(s) 65, 220, 373
AluI AGCT 3 cut(s) 65, 220, 373
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 74
BciVI GTATCC 1 cut(s) 195
BclI TGATCA 2 cut(s) 163, 388
BcnI CCSGG 1 cut(s) 348
BfaI CTAG 1 cut(s) 339
BfuI GTATCC 1 cut(s) 195
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 452
Bse8I GATNNNNATC 1 cut(s) 250
BseGI GGATG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 250
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 347
Bsp143I GATC 3 cut(s) 163, 245, 388
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 452
BssMI GATC 3 cut(s) 163, 245, 388
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 3 cut(s) 166, 248, 391
BstMBI GATC 3 cut(s) 163, 245, 388
BstSCI CCNGG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BsuI GTATCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 384
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 2 cut(s) 80, 167
CviJI RGCY 5 cut(s) 65, 220, 241, 359, 373
CviKI_1 RGCY 5 cut(s) 65, 220, 241, 359, 373
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 165, 247, 390
DpnII GATC 3 cut(s) 163, 245, 388
FaeI CATG 2 cut(s) 83, 170
FaiI YATR 7 cut(s) 68, 81, 168, 260, 299, 305, 457
FatI CATG 2 cut(s) 79, 166
FbaI TGATCA 2 cut(s) 163, 388
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 339
GluI GCNGC 1 cut(s) 63
HapII CCGG 1 cut(s) 347
Hin1II CATG 2 cut(s) 83, 170
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 6, 40
Hpy188III TCNNGA 5 cut(s) 51, 161, 229, 339, 419
Hpy8I GTNNAC 2 cut(s) 6, 40
HpyAV CCTTC 2 cut(s) 305, 349
HpyCH4V TGCA 5 cut(s) 62, 113, 119, 214, 400
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 2 cut(s) 83, 170
Ksp22I TGATCA 2 cut(s) 163, 388
Kzo9I GATC 3 cut(s) 163, 245, 388
LpnPI CCDG 4 cut(s) 36, 206, 360, 433
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 339
MalI GATC 3 cut(s) 165, 247, 390
MboI GATC 3 cut(s) 163, 245, 388
MboII GAAGA 5 cut(s) 103, 136, 246, 270, 320
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 245
MluCI AATT 3 cut(s) 44, 392, 410
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 2 cut(s) 13, 84
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 392
NciI CCSGG 1 cut(s) 348
NdeII GATC 3 cut(s) 163, 245, 388
NlaIII CATG 2 cut(s) 83, 170
NlaIV GGNNCC 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 245
RseI CAYNNNNRTG 2 cut(s) 13, 84
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 163, 245, 388
ScrFI CCNGG 1 cut(s) 348
SetI ASST 4 cut(s) 36, 67, 222, 375
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 13, 84
Sse9I AATT 3 cut(s) 44, 392, 410
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 346
TasI AATT 3 cut(s) 44, 392, 410
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 391
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 87, 96, 453
TspRI CASTG 1 cut(s) 391
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.