Rw6G033100

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006973
Physical Location & Seq
Forward (+)
57492189 .. 57495021
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033100.1

Sequence Viewer

Length: 717 bp
ATGATATCTTTTTGGTATTTCATTCATTTGGCTTCTTCAATACACATCGTTGATTATATTATTCTGCACATTCATTTTGTATTGACTTACTATCATCAATACAAGTCCTTTGACAGTGATCGTTCACAACCGATGCTGACACAACGGTGGAGAAAAATACAAAAGATGGTGAACAAATTTTCAGGATGTTTTGCAGCGATAAATGAAAGGCATGAAAGTGGGAAGACTGAACAAGACAAGATTTCAGATGCAAAGAAGATGTTTGAAGCACAAGAAAAGCTTCAGTTCAATCTTGATCATGCTTGGATTTTCAAGAAAAGTAAGCAAAGATCTAAGTCTTGTATAGCTAATATCTCATCATCTTCAACTACAGGCCCTGTTATAGATATTGAAGAAGACACGTACACTTGCTTTCCAGTGTCTAGACCACCGGGTAAGAAGGCTAAGAAAAGAAAGCTGAAAGAAACCACTGATCAATTGGTGCAAATACAAAAATTACATCAAGAGAAAAAAGAAGGAGATGAAAAGAAACTAGAAATTATAAAGGAGAAAGTTGAAGTTGACAAGGAGAAACCACAAGTTAGGAAACTTGAGGTTGAGAACAGAAAATTTGAGGCTGAGATGAGAATTATGTCTATGGATACATCTACTATGAATCCTAAGCAGAGGGCATATTATTCCAAACTTCAGATGAAAATTTTGCAAGGTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

238

Amino Acids

28.15

Weight (kDa)

9.44

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 119 - 233 2.6e-13 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AcsI RAATTY 3 cut(s) 176, 608, 696
AcuI CTGAAG 2 cut(s) 266, 671
AfaI GTAC 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 7 cut(s) 39, 266, 289, 313, 366, 392, 557
AleI CACNNNNGTG 1 cut(s) 145
AluBI AGCT 3 cut(s) 280, 347, 457
AluI AGCT 3 cut(s) 280, 347, 457
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 3 cut(s) 176, 608, 696
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 374
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 181
BbsI GAAGAC 2 cut(s) 230, 402
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 160
BciVI GTATCC 1 cut(s) 634
BclI TGATCA 2 cut(s) 295, 472
BcnI CCSGG 1 cut(s) 432
BfaI CTAG 2 cut(s) 423, 533
BfmI CTRYAG 1 cut(s) 369
BfuI GTATCC 1 cut(s) 634
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 123, 238
BpiI GAAGAC 2 cut(s) 230, 402
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 432
BsaAI YACGTR 1 cut(s) 402
Bse1I ACTGG 1 cut(s) 416
BseGI GGATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 609
BseNI ACTGG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 431
BsnI GGCC 1 cut(s) 375
Bsp143I GATC 4 cut(s) 118, 295, 329, 472
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 610
BsrI ACTGG 1 cut(s) 416
BssMI GATC 4 cut(s) 118, 295, 329, 472
Bst4CI ACNGT 2 cut(s) 116, 147
BstBAI YACGTR 1 cut(s) 402
BstDEI CTNAG 4 cut(s) 333, 444, 618, 660
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 4 cut(s) 121, 298, 332, 475
BstMBI GATC 4 cut(s) 118, 295, 329, 472
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 2 cut(s) 230, 402
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuI GTATCC 1 cut(s) 634
BsuRI GGCC 1 cut(s) 375
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 121, 423, 468
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 212, 299
CviJI RGCY 7 cut(s) 32, 280, 347, 375, 443, 457, 617
CviKI_1 RGCY 7 cut(s) 32, 280, 347, 375, 443, 457, 617
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 4 cut(s) 333, 444, 618, 660
DpnI GATC 4 cut(s) 120, 297, 331, 474
DpnII GATC 4 cut(s) 118, 295, 329, 472
Eco32I GATATC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 266, 671
EcoO109I RGGNCCY 1 cut(s) 374
EcoRV GATATC 1 cut(s) 6
FaeI CATG 2 cut(s) 215, 302
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 2 cut(s) 211, 298
FbaI TGATCA 2 cut(s) 295, 472
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 423, 533
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 431
Hin1II CATG 2 cut(s) 215, 302
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 655
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 4 cut(s) 125, 172, 405, 562
Hpy188I TCNGA 2 cut(s) 247, 690
Hpy188III TCNNGA 5 cut(s) 183, 293, 313, 423, 503
Hpy8I GTNNAC 4 cut(s) 125, 172, 405, 562
HpyAV CCTTC 2 cut(s) 433, 509
HpyCH4III ACNGT 2 cut(s) 116, 147
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 5 cut(s) 67, 194, 251, 484, 703
HpyF3I CTNAG 4 cut(s) 333, 444, 618, 660
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 2 cut(s) 215, 302
Ksp22I TGATCA 2 cut(s) 295, 472
Kzo9I GATC 4 cut(s) 118, 295, 329, 472
LpnPI CCDG 5 cut(s) 168, 357, 390, 429, 444
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 2 cut(s) 123, 238
MaeI CTAG 2 cut(s) 423, 533
MaeII ACGT 1 cut(s) 401
MalI GATC 4 cut(s) 120, 297, 331, 474
MboI GATC 4 cut(s) 118, 295, 329, 472
MboII GAAGA 6 cut(s) 27, 235, 268, 354, 404, 407
MfeI CAATTG 1 cut(s) 476
MflI RGATCY 1 cut(s) 329
MluCI AATT 7 cut(s) 176, 476, 494, 537, 608, 627, 696
MnlI CCTC 3 cut(s) 586, 607, 660
MroXI GAANNNNTTC 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 145, 216
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 476
NciI CCSGG 1 cut(s) 432
NdeII GATC 4 cut(s) 118, 295, 329, 472
NlaIII CATG 2 cut(s) 215, 302
OliI CACNNNNGTG 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 655
PkrI GCNGC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 402
PsiI TTATAA 1 cut(s) 542
PspPI GGNCC 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 145, 216
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 4 cut(s) 118, 295, 329, 472
Sau96I GGNCC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 432
SetI ASST 6 cut(s) 282, 349, 404, 459, 597, 709
SfaNI GCATC 2 cut(s) 123, 238
SfcI CTRYAG 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 145, 216
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 7 cut(s) 176, 476, 494, 537, 608, 627, 696
SspMI CTAG 2 cut(s) 423, 533
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 116, 147
TaiI ACGT 1 cut(s) 404
TasI AATT 7 cut(s) 176, 476, 494, 537, 608, 627, 696
TfiI GAWTC 1 cut(s) 655
TscAI CASTG 3 cut(s) 121, 423, 475
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 8 cut(s) 10, 14, 62, 219, 228, 537, 668, 707
TspRI CASTG 3 cut(s) 121, 423, 475
XapI RAATTY 3 cut(s) 176, 608, 696
XbaI TCTAGA 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 2 cut(s) 423, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.