Rw7G038420

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006973
Physical Location & Seq
Reverse (-)
58545973 .. 58551993
6021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038420.1

Sequence Viewer

Length: 900 bp
ATGAGGGCGCCTCAAAATCGGAATCTATTTCGACGAGGGCGCCTTGAAATCGGAATCTATTTCGAGAGGTTAAATGCCTCACTAATAAGCTCTTTTGATTTTATATATCTGATCTCCTACCAGATTTGCACCTATTTGTTTTCTTCTTTTTGCAATATCTTGTTCCTCATTGAGAATGAAGGAATATCAATTAAGTTACATCTCAATTTGCTGTCATGGAATGATCAAAAACTGCAAACTTTTTGGGGGAAAATTACAGAGTACTATCATCAGTACAAGTCCTTTGACAATGATCGTTCACAACCGATGCTGACACAACGGTCGGGAAAAATACAAAAGATGGTGAACAAATTTTCAGGATGTTTTGCCGCTATAAATGAAAGGCATGAAAGTGGGAAGACTGAACAAGACAAGCTTCGGTTCAATCGTGATCATGCTTGGATTTTGTTGAGGCACCAACCAAAGTGGATACAATTAATGCAAGAGTTGGACAACAAGAAAAGTAAGCAAAGATCTAAGTCTTGTATAACTAAAATCTCGTCATCTTCAACTACAGGCCCTTTCATAGATATTGAAGAAGACACGAACACTTGCTTTCCAGTGTCTAGACCACCAGGTAAGAAGGTTGAGAAAAGAAAGCTGAAAGAAACCACTGATCAATTGGTGCAAATACAAAAATTACATCAAGAGAAAAAAGAAAGAGATGAAAAGAAACTAGAAATTATGAAGGAGAAAGTTGAAGTTGACAAGGAGAAACTGCGAGTTAGGAAACTTGAGGCTGAGAATAGAAAATTGGAGGCTGAGATGAGAAATATGTATATGGATACATCTACTATGAATCATGAGCAGAAGGCATATTATTCCAAACTTCAAATGAAAATTTTGCAAGGTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

299

Amino Acids

35.65

Weight (kDa)

9.48

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 141 - 294 1.4e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
AccB1I GGYRCC 3 cut(s) 7, 39, 453
AciI CCGC 1 cut(s) 369
AcsI RAATTY 2 cut(s) 350, 879
AcyI GRCGYC 2 cut(s) 8, 40
AfaI GTAC 2 cut(s) 263, 275
AgsI TTSAA 6 cut(s) 47, 424, 549, 575, 740, 872
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AluBI AGCT 3 cut(s) 90, 415, 640
AluI AGCT 3 cut(s) 90, 415, 640
AoxI GGCC 1 cut(s) 556
ApoI RAATTY 2 cut(s) 350, 879
AseI ATTAAT 1 cut(s) 476
AspLEI GCGC 2 cut(s) 10, 42
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 355
BanI GGYRCC 3 cut(s) 7, 39, 453
BbsI GAAGAC 2 cut(s) 404, 585
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 615
BciVI GTATCC 2 cut(s) 462, 817
BclI TGATCA 3 cut(s) 223, 430, 655
BfaI CTAG 2 cut(s) 606, 716
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 2 cut(s) 11, 43
BfuI GTATCC 2 cut(s) 462, 817
BglII AGATCT 1 cut(s) 512
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 3 cut(s) 9, 41, 455
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 404, 585
BplI GAGNNNNNCTC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 794
BsaHI GRCGYC 2 cut(s) 8, 40
Bse1I ACTGG 1 cut(s) 599
BseBI CCWGG 1 cut(s) 615
BseGI GGATG 1 cut(s) 365
BseMII CTCAG 2 cut(s) 771, 792
BseNI ACTGG 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 3 cut(s) 7, 39, 453
BsiEI CGRYCG 1 cut(s) 323
BsnI GGCC 1 cut(s) 558
Bsp143I GATC 6 cut(s) 111, 223, 292, 430, 512, 655
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 2 cut(s) 772, 793
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 3 cut(s) 9, 41, 455
BspT107I GGYRCC 3 cut(s) 7, 39, 453
BsrI ACTGG 1 cut(s) 599
BssMI GATC 6 cut(s) 111, 223, 292, 430, 512, 655
BssNI GRCGYC 2 cut(s) 8, 40
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 321
BstACI GRCGYC 2 cut(s) 8, 40
BstDEI CTNAG 3 cut(s) 516, 780, 801
BstF5I GGATG 1 cut(s) 365
BstH2I RGCGCY 2 cut(s) 11, 43
BstHHI GCGC 2 cut(s) 10, 42
BstKTI GATC 6 cut(s) 114, 226, 295, 433, 515, 658
BstMBI GATC 6 cut(s) 111, 223, 292, 430, 512, 655
BstMCI CGRYCG 1 cut(s) 323
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 1 cut(s) 552
BstV2I GAAGAC 2 cut(s) 404, 585
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuI GTATCC 2 cut(s) 462, 817
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 606, 651
CciI TCATGA 1 cut(s) 841
CfoI GCGC 2 cut(s) 10, 42
Cfr13I GGNCC 1 cut(s) 557
CsiI ACCWGGT 1 cut(s) 613
Csp6I GTAC 2 cut(s) 262, 274
CspCI CAANNNNNGTGG 2 cut(s) 446, 481
CviAII CATG 4 cut(s) 216, 386, 434, 842
CviJI RGCY 6 cut(s) 90, 415, 558, 640, 779, 800
CviKI_1 RGCY 6 cut(s) 90, 415, 558, 640, 779, 800
CviQI GTAC 2 cut(s) 262, 274
DdeI CTNAG 3 cut(s) 516, 780, 801
DinI GGCGCC 2 cut(s) 9, 41
DpnI GATC 6 cut(s) 113, 225, 294, 432, 514, 657
DpnII GATC 6 cut(s) 111, 223, 292, 430, 512, 655
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 613
EgeI GGCGCC 2 cut(s) 9, 41
EheI GGCGCC 2 cut(s) 9, 41
FaeI CATG 4 cut(s) 219, 389, 437, 845
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 4 cut(s) 215, 385, 433, 841
FbaI TGATCA 3 cut(s) 223, 430, 655
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 2 cut(s) 606, 716
GlaI GCGC 2 cut(s) 9, 41
GluI GCNGC 1 cut(s) 369
HaeII RGCGCY 2 cut(s) 11, 43
HaeIII GGCC 1 cut(s) 558
HhaI GCGC 2 cut(s) 10, 42
Hin1I GRCGYC 2 cut(s) 8, 40
Hin1II CATG 4 cut(s) 219, 389, 437, 845
Hin6I GCGC 2 cut(s) 8, 40
HinP1I GCGC 2 cut(s) 8, 40
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 3 cut(s) 22, 54, 838
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 299, 346, 745
Hpy188I TCNGA 3 cut(s) 21, 53, 111
Hpy188III TCNNGA 7 cut(s) 64, 324, 357, 428, 606, 686, 842
Hpy8I GTNNAC 3 cut(s) 299, 346, 745
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 4 cut(s) 173, 616, 721, 844
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 6 cut(s) 129, 153, 235, 481, 667, 886
HpyF3I CTNAG 3 cut(s) 516, 780, 801
Hsp92I GRCGYC 2 cut(s) 8, 40
Hsp92II CATG 4 cut(s) 219, 389, 437, 845
HspAI GCGC 2 cut(s) 8, 40
KasI GGCGCC 2 cut(s) 7, 39
Ksp22I TGATCA 3 cut(s) 223, 430, 655
Kzo9I GATC 6 cut(s) 111, 223, 292, 430, 512, 655
LpnPI CCDG 6 cut(s) 134, 342, 540, 600, 612, 627
LweI GCATC 1 cut(s) 297
MabI ACCWGGT 1 cut(s) 613
MaeI CTAG 2 cut(s) 606, 716
MaeIII GTNAC 1 cut(s) 195
MalI GATC 6 cut(s) 113, 225, 294, 432, 514, 657
MboI GATC 6 cut(s) 111, 223, 292, 430, 512, 655
MboII GAAGA 5 cut(s) 135, 409, 537, 587, 590
MfeI CAATTG 1 cut(s) 659
MflI RGATCY 1 cut(s) 512
Mly113I GGCGCC 2 cut(s) 8, 40
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 8 cut(s) 21, 29, 60, 88, 176, 444, 769, 790
MseI TTAA 3 cut(s) 71, 192, 476
MslI CAYNNNNRTG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 615
MunI CAATTG 1 cut(s) 659
MvaI CCWGG 1 cut(s) 615
NarI GGCGCC 2 cut(s) 8, 40
NdeII GATC 6 cut(s) 111, 223, 292, 430, 512, 655
NlaIII CATG 4 cut(s) 219, 389, 437, 845
NlaIV GGNNCC 3 cut(s) 9, 41, 455
PagI TCATGA 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PfeI GAWTC 3 cut(s) 22, 54, 838
PkrI GCNGC 1 cut(s) 370
PluTI GGCGCC 2 cut(s) 11, 43
PshBI ATTAAT 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 9, 41, 455
PspPI GGNCC 1 cut(s) 557
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 2 cut(s) 263, 275
RsaNI GTAC 2 cut(s) 262, 274
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 3 cut(s) 71, 192, 476
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 6 cut(s) 111, 223, 292, 430, 512, 655
Sau96I GGNCC 1 cut(s) 557
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 615
SetI ASST 8 cut(s) 71, 92, 134, 417, 619, 627, 642, 892
SexAI ACCWGGT 1 cut(s) 613
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 1 cut(s) 552
SfoI GGCGCC 2 cut(s) 9, 41
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SsiI CCGC 1 cut(s) 369
SspDI GGCGCC 2 cut(s) 7, 39
SspMI CTAG 2 cut(s) 606, 716
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 31, 63
TatI WGTACW 2 cut(s) 261, 273
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 3 cut(s) 22, 54, 838
Tru1I TTAA 3 cut(s) 71, 192, 476
Tru9I TTAA 3 cut(s) 71, 192, 476
TscAI CASTG 2 cut(s) 606, 658
TspDTI ATGAA 8 cut(s) 192, 393, 402, 553, 720, 740, 851, 890
TspRI CASTG 2 cut(s) 606, 658
VspI ATTAAT 1 cut(s) 476
XapI RAATTY 2 cut(s) 350, 879
XbaI TCTAGA 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XspI CTAG 2 cut(s) 606, 716
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.