FvH4_5g29683

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006973
Physical Location & Seq
Forward (+)
20637951 .. 20638655
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29683.t1

Sequence Viewer

Length: 624 bp
ATGCTGAGCCAACGATGGAGAAAAATACAAAGGCTGGTGAACAAGTATTCAGGATGTGTAGCTGCTATAAATTCATTAAATGAAAGCGGCAAGACTGAACAAGACAGGATTGCAGATACAAAAAAAATGTTTGAAGCACAAGAAGAGTGTAAGTGGAACCTTGATCATGCTTGGATTTTGCTGAGGCACCAACCAAAGTGGATACAACTAAATCAAGAGCTGAACAACAAAAACAGTAAGAAAAAATCTAAACCTCATATCTCAACATCTTTAGCTATAGGCAGTGATATAGACATTGAGGAAGAAATTAATATTTGCAATCCAGTAGCTAGACCACCAGGTAAGAAAACTAAGAAAAGAAAGCTGAAAGAAACAAGTGATCAATTGGTTCTAATTGAAAAACTGCATCTAGAGAAAAAAGAAAGAGATGAAAAGAAACTAGCTATTATGAAGGAGAAAGTTGAAGTTGATAAAGAGAAATTGAGGGTTAGAAAACTTGAGGTTGATAATAGGAAGTTTGAAGCAGAGATGAGAATCATGTCTATGGATACTTCTAAGATGAACCATGAGGAAAGGGCATACTATTCCAAACTACAAATGAAGATTTTGCAGGGTGACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

208

Amino Acids

24.46

Weight (kDa)

9.52

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 52 - 202 3.7e-18 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 186
AciI CCGC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 70
AgsI TTSAA 4 cut(s) 134, 398, 464, 521
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 6 cut(s) 62, 220, 275, 329, 364, 443
AluI AGCT 6 cut(s) 62, 220, 275, 329, 364, 443
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 70
AseI ATTAAT 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 2 cut(s) 195, 541
BclI TGATCA 2 cut(s) 163, 379
BfaI CTAG 4 cut(s) 330, 410, 440, 622
BfmI CTRYAG 1 cut(s) 276
BfuI GTATCC 2 cut(s) 195, 541
BisI GCNGC 2 cut(s) 63, 88
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 64, 89
Bme1390I CCNGG 1 cut(s) 339
BmiI GGNNCC 2 cut(s) 158, 188
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 182
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 533
BseBI CCWGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 533
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 163, 379
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 158, 188
BspT107I GGYRCC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 323
BssMI GATC 2 cut(s) 163, 379
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 4 cut(s) 5, 182, 351, 555
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 2 cut(s) 166, 382
BstMBI GATC 2 cut(s) 163, 379
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 49
BsuI GTATCC 2 cut(s) 195, 541
BtsCI GGATG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 337
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 3 cut(s) 167, 538, 566
CviJI RGCY 8 cut(s) 9, 34, 62, 220, 275, 329, 364, 443
CviKI_1 RGCY 8 cut(s) 9, 34, 62, 220, 275, 329, 364, 443
DdeI CTNAG 4 cut(s) 5, 182, 351, 555
DpnI GATC 2 cut(s) 165, 381
DpnII GATC 2 cut(s) 163, 379
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 3 cut(s) 170, 541, 569
FatI CATG 3 cut(s) 166, 537, 565
FbaI TGATCA 2 cut(s) 163, 379
Fnu4HI GCNGC 2 cut(s) 63, 88
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 63, 88
FspBI CTAG 4 cut(s) 330, 410, 440, 622
GluI GCNGC 2 cut(s) 63, 88
Hin1II CATG 3 cut(s) 170, 541, 569
HinfI GANTC 1 cut(s) 534
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 51, 215, 410
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 113, 318, 406, 610
HpyF3I CTNAG 4 cut(s) 5, 182, 351, 555
Hsp92II CATG 3 cut(s) 170, 541, 569
Ksp22I TGATCA 2 cut(s) 163, 379
Kzo9I GATC 2 cut(s) 163, 379
LpnPI CCDG 7 cut(s) 20, 36, 91, 324, 336, 351, 596
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 415
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 4 cut(s) 330, 410, 440, 622
MaeIII GTNAC 1 cut(s) 614
MalI GATC 2 cut(s) 165, 381
MboI GATC 2 cut(s) 163, 379
MboII GAAGA 3 cut(s) 155, 314, 613
MfeI CAATTG 1 cut(s) 383
MluCI AATT 5 cut(s) 70, 306, 383, 393, 479
MnlI CCTC 6 cut(s) 177, 264, 292, 477, 493, 562
MseI TTAA 2 cut(s) 77, 309
MslI CAYNNNNRTG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 339
NdeII GATC 2 cut(s) 163, 379
NlaIII CATG 3 cut(s) 170, 541, 569
NlaIV GGNNCC 2 cut(s) 158, 188
NmuCI GTSAC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 534
PkrI GCNGC 2 cut(s) 64, 89
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 158, 188
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 77, 309
SatI GCNGC 2 cut(s) 63, 88
Sau3AI GATC 2 cut(s) 163, 379
ScrFI CCNGG 1 cut(s) 339
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 5 cut(s) 70, 306, 383, 393, 479
SsiI CCGC 1 cut(s) 87
SspI AATATT 1 cut(s) 313
SspMI CTAG 4 cut(s) 330, 410, 440, 622
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 236
TasI AATT 5 cut(s) 70, 306, 383, 393, 479
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 534
Tru1I TTAA 2 cut(s) 77, 309
Tru9I TTAA 2 cut(s) 77, 309
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 6 cut(s) 63, 96, 444, 464, 575, 614
TspRI CASTG 1 cut(s) 289
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 409
XspI CTAG 4 cut(s) 330, 410, 440, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.