Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006973

Physical Location & Seq

Genomic Coordinates Forward (+)

30336227 .. 30343146

Gene Structure 6920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38382.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGACCAACAATGTCGTCGACTTCTCCAAGGCCCAAACCGGCATCGACATCGCGTTGGGTTCCCGACGCAGATCCGGCCACAAAGAGTTTCAAACAGGTTCAAATTTCAATTGCTGGGTTTCGTTGGAAATTCGGGTCTTTTCTAATTTGATTTTGGTGTTTATTGGTCAGAATGAGCGATCGGTAGCGACGGCGGCGGTGGTGGTGTTTGGGGTAGATCGAGATGGTTTTGGTGGTGGTTTGGGGCAAATCGAGATGATTTTGGTGGTGGTATTCTGGGCAAATCGTATATGGGTAGATCGACATGGTGGTGGTTTTGGGGCAGATAGTATGACGGTGGTGATGGGATATATCCTTCATGGGCCACTTTTGTCAAAACCATTCCATGTCCACAAGGAGAGATCAAAGAATTTTTCGAAAGCTCAAGAGGGATGTAGGAAAGATGTAGAAAGAGCATTTGGAGTACTTCAAGCACGTTTTGCTATTGTTCGTGGACCTGCTCGTTTTTGGGATCGTGAAACTCTTCAAAAGATAATGAAAACATGTGTTATAATGCACAACATGATTATAGAAGATGAACGCGCCGAACGCATTGCACACAATGATCTTGAAACTCTTGCAAGACAATATGTTGAACCAGAAGAAGAAGAAAGAGATGAGTTGTTGAGTACAAGAAAGAGGCTGAGGCAGTCCCTTGCTACTTTCCATGGCAAGTTGTTTATGGGAAAAAAAATTTGTGTGGCATGTAGCAAACAAGTTCCTACAATACAAATTAAAGAAGTAGCAGTAGAGAGTTCAGAGTTGGATGATAATGCTACTGAACTGAGTTCTACTTCTGAGCAAATGAGAAGAATTGAGGAGCATTTACTGAGCAACTTTGCAGATGAGAAGCTATCTGGAAGCTACACAACTCAGGCTTCAAGAGGTCTCTGCTTCAACGTAGTGGAAGATAACCTTCTTATCAGTGGATGGTTAAATGTTGATGTTAAAGCAACGGTGGGGGAAAATACTGAGAGAGATCAACAAATTTCAGGATGTTTGGCAACCATAAATGGGAAAAATGAAAGTGGGAAGACTGAACAAGATAAGATTGCAGAAGCAAAGAAATTGTTTGAAGAGCAAGAAAACAAAAGGTTCACTCTTGACCATGCTTGGGTTTTGTTGAGGCACCAACCAAAATGGATACAATCAATGCAAGAGTTTGACAACAAAAAAGGTAAGAAAAGATCTAACTCTTCAACTACATGCACTCACATAGATATTGTGGAAGACATGAACACTTGCATTTCAGTATCTAGACCACCAGGTAGAAAGGCTGAAAAAAGAAAGCTGAAAGAAACTGACAAATTAGCACAAATTGAAAAATTACATCTGGAGAAAAAAGAAAGAGATGATAAAAAACTACAAATTATGAAGGAGAAGGTTGAAGTTGGTAAGGAGAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

483

Amino Acids

54.8

Weight (kDa)

8.57

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	131 - 195	4e-27	Plant transposon protein
NAM-associated	PF14303	377 - 477	1.5e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006973)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21031 FvH4_4g19882 FvH4_5g29683 FvH4_6g38382
malus_domestica	MD07G1026100.v1.1
prunus_persica	Prupe.1G172500_v2.0.a1 Prupe.1G279700_v2.0.a1
pyrus_communis	pycom07g01990
rosa_chinensis	RchiOBHm_Chr2g0117811 RchiOBHm_Chr6g0270241 RchiOBHm_Chr7g0215961
rosa_multiflora	Rmu_sc0001477.1_g000012 Rmu_sc0002693.1_g000005 Rmu_sc0003073.1_g000010
rosa_roxburghii	Rroxscaffold_1G00049230 Rroxscaffold_4G00327030
rosa_rugosa	Rorug03G0186700 Rorug05G0239600 Rorug06G0145300
rosa_wichuraiana	Rw1G019540 Rw1G026630 Rw2G015000 Rw2G052400 Rw6G033100 Rw7G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	1167
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	53, 582
AciI	CCGC	2 cut(s)	194, 197
AclWI	GGATC	2 cut(s)	66, 519
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	5 cut(s)	103, 129, 409, 732, 1026
AfaI	GTAC	2 cut(s)	465, 670
AfiI	CCNNNNNNNGG	2 cut(s)	1053, 1153
AflIII	ACRYGT	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	1303
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	4 cut(s)	422, 892, 903, 1330
AluI	AGCT	4 cut(s)	422, 892, 903, 1330
Alw26I	GTCTC	1 cut(s)	932
AlwI	GGATC	2 cut(s)	66, 519
AoxI	GGCC	3 cut(s)	30, 76, 362
ApoI	RAATTY	5 cut(s)	103, 129, 409, 732, 1026
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	3 cut(s)	31, 362, 494
AsuHPI	GGTGA	1 cut(s)	352
AsuII	TTCGAA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	1167
BbsI	GAAGAC	2 cut(s)	1079, 1275
BbvCI	CCTCAGC	1 cut(s)	683
BccI	CCATC	3 cut(s)	218, 337, 963
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 575, 609
BciT130I	CCWGG	1 cut(s)	1305
BciVI	GTATCC	1 cut(s)	1176
BcoDI	GTCTC	1 cut(s)	932
BfaI	CTAG	1 cut(s)	1296
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	1176
BglII	AGATCT	1 cut(s)	1226
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	1305
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	31, 362, 494
BmiI	GGNNCC	2 cut(s)	61, 1169
BmrFI	CCNGG	1 cut(s)	1305
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	1079, 1275
BpmI	CTGGAG	1 cut(s)	1394
Bpu10I	CCTNAGC	1 cut(s)	683
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	27, 706
BsaXI	ACNNNNNCTCC	1 cut(s)	1430
Bsc4I	CCNNNNNNNGG	2 cut(s)	1053, 1153
Bse118I	RCCGGY	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	1305
BseDI	CCNNGG	2 cut(s)	27, 706
BseGI	GGATG	4 cut(s)	437, 811, 974, 1040
BseLI	CCNNNNNNNGG	2 cut(s)	1053, 1153
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	6 cut(s)	674, 815, 828, 860, 926, 1002
BseRI	GAGGAG	1 cut(s)	872
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	53, 582
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	3 cut(s)	32, 78, 364
BshNI	GGYRCC	1 cut(s)	1167
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	39, 75
BslFI	GGGAC	1 cut(s)	676
BslI	CCNNNNNNNGG	2 cut(s)	1053, 1153
BsmAI	GTCTC	1 cut(s)	932
BsmFI	GGGAC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	32, 78, 364
Bso31I	GGTCTC	1 cut(s)	932
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	2 cut(s)	194, 197
BspANI	GGCC	3 cut(s)	32, 78, 364
BspCNI	CTCAG	6 cut(s)	675, 816, 829, 861, 925, 1003
BspFNI	CGCG	2 cut(s)	53, 582
BspLI	GGNNCC	2 cut(s)	61, 1169
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	2 cut(s)	66, 519
BspQI	GCTCTTC	1 cut(s)	1110
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	1167
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	27, 706
BssMI	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
BssT1I	CCWWGG	2 cut(s)	27, 706
Bst2UI	CCWGG	1 cut(s)	1305
Bst4CI	ACNGT	2 cut(s)	337, 997
Bst6I	CTCTTC	3 cut(s)	528, 1110, 1240
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	416
BstDEI	CTNAG	6 cut(s)	683, 824, 837, 869, 912, 1011
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	4 cut(s)	437, 811, 974, 1040
BstFNI	CGCG	2 cut(s)	53, 582
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	9 cut(s)	74, 182, 220, 301, 404, 514, 607, 1021, 1229
BstMAI	GTCTC	1 cut(s)	932
BstMBI	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 194, 479, 588
BstNI	CCWGG	1 cut(s)	1305
BstNSI	RCATGY	3 cut(s)	546, 747, 1248
BstSCI	CCNGG	1 cut(s)	1303
BstUI	CGCG	2 cut(s)	53, 582
BstV2I	GAAGAC	2 cut(s)	1079, 1275
BstX2I	RGATCY	2 cut(s)	71, 1226
BstYI	RGATCY	2 cut(s)	71, 1226
BsuI	GTATCC	1 cut(s)	1176
BsuRI	GGCC	3 cut(s)	32, 78, 364
BtgI	CCRYGG	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	437, 811, 974, 1040
BtsIMutI	CAGTG	1 cut(s)	970
BveI	ACCTGC	1 cut(s)	505
CfoI	GCGC	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	31, 362, 494
CseI	GACGC	1 cut(s)	75
CsiI	ACCWGGT	1 cut(s)	1303
Csp6I	GTAC	2 cut(s)	464, 669
CviQI	GTAC	2 cut(s)	464, 669
DdeI	CTNAG	6 cut(s)	683, 824, 837, 869, 912, 1011
DpnI	GATC	9 cut(s)	73, 181, 219, 300, 403, 513, 606, 1020, 1228
DpnII	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	528, 1110, 1240
EarI	CTCTTC	3 cut(s)	528, 1110, 1240
Eco130I	CCWWGG	2 cut(s)	27, 706
Eco31I	GGTCTC	1 cut(s)	932
Eco47I	GGWCC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	1303
EcoT14I	CCWWGG	2 cut(s)	27, 706
ErhI	CCWWGG	2 cut(s)	27, 706
FalI	AAGNNNNNCTT	2 cut(s)	939, 971
FaqI	GGGAC	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	4 cut(s)	444, 818, 981, 1047
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	1296
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	1394
HaeIII	GGCC	3 cut(s)	32, 78, 364
HapII	CCGG	2 cut(s)	39, 75
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	584
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	39, 75
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	4 cut(s)	19, 391, 494, 1137
Hpy188I	TCNGA	3 cut(s)	171, 799, 838
Hpy8I	GTNNAC	4 cut(s)	19, 391, 494, 1137
Hpy99I	CGWCG	3 cut(s)	20, 69, 193
HpyAV	CCTTC	4 cut(s)	365, 965, 1408, 1414
HpyCH4III	ACNGT	2 cut(s)	337, 997
HpyCH4IV	ACGT	2 cut(s)	475, 939
HpyCH4V	TGCA	8 cut(s)	556, 596, 620, 881, 1094, 1195, 1248, 1284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 194, 479, 588
HpyF3I	CTNAG	6 cut(s)	683, 824, 837, 869, 912, 1011
HpySE526I	ACGT	2 cut(s)	475, 939
HspAI	GCGC	1 cut(s)	582
Kzo9I	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
LguI	GCTCTTC	1 cut(s)	1110
LmnI	GCTCC	1 cut(s)	859
LweI	GCATC	1 cut(s)	51
MabI	ACCWGGT	1 cut(s)	1303
MaeI	CTAG	1 cut(s)	1296
MaeII	ACGT	2 cut(s)	475, 939
MalI	GATC	9 cut(s)	73, 181, 219, 300, 403, 513, 606, 1020, 1228
MboI	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
MfeI	CAATTG	1 cut(s)	109
MflI	RGATCY	2 cut(s)	71, 1226
MmeI	TCCRAC	2 cut(s)	105, 783
MnlI	CCTC	6 cut(s)	421, 672, 678, 850, 917, 1158
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	3 cut(s)	774, 974, 987
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	39, 75
MspR9I	CCNGG	1 cut(s)	1305
MunI	CAATTG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	1305
MvnI	CGCG	2 cut(s)	53, 582
MwoI	GCNNNNNNNGC	4 cut(s)	75, 194, 479, 588
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
NlaIV	GGNNCC	2 cut(s)	61, 1169
NspI	RCATGY	3 cut(s)	546, 747, 1248
NspV	TTCGAA	1 cut(s)	416
PciI	ACATGT	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	1110
PdmI	GAANNNNTTC	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	196
Ple19I	CGATCG	1 cut(s)	182
PscI	ACATGT	1 cut(s)	542
PsiI	TTATAA	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	1303
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	1303
PspN4I	GGNNCC	2 cut(s)	61, 1169
PspPI	GGNCC	3 cut(s)	31, 362, 494
PsuI	RGATCY	2 cut(s)	71, 1226
PvuI	CGATCG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	465, 670
RsaNI	GTAC	2 cut(s)	464, 669
RseI	CAYNNNNRTG	1 cut(s)	309
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	1110
SaqAI	TTAA	3 cut(s)	774, 974, 987
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	9 cut(s)	71, 179, 217, 298, 401, 511, 604, 1018, 1226
Sau96I	GGNCC	3 cut(s)	31, 362, 494
ScaI	AGTACT	1 cut(s)	465
ScrFI	CCNGG	1 cut(s)	1305
SexAI	ACCWGGT	1 cut(s)	1303
SfaNI	GCATC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	416
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SsiI	CCGC	2 cut(s)	194, 197
SspMI	CTAG	1 cut(s)	1296
StyD4I	CCNGG	1 cut(s)	1303
StyI	CCWWGG	2 cut(s)	27, 706
TaaI	ACNGT	2 cut(s)	337, 997
TaiI	ACGT	2 cut(s)	478, 942
TaqI	TCGA	6 cut(s)	18, 45, 220, 252, 301, 416
TatI	WGTACW	2 cut(s)	463, 668
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	774, 974, 987
Tru9I	TTAA	3 cut(s)	774, 974, 987
TscAI	CASTG	1 cut(s)	970
TspDTI	ATGAA	6 cut(s)	347, 551, 591, 1077, 1289, 1427
TspRI	CASTG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	5 cut(s)	103, 129, 409, 732, 1026
XbaI	TCTAGA	1 cut(s)	1295
XceI	RCATGY	3 cut(s)	546, 747, 1248
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	1296
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.